RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ACOX2Q99424 681 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 CLK4Q9HAZ1 481 aaKnown RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 PNPLA3Q9NST1 481 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 PRPF19Q9UMS4 504 aaKnown RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 TRIOBPQ9H2D6 2365 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 PRSS51A0A1B0GVH4 220 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 STC2O76061 302 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 S1PR4O95977 384 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 NR4A1P22736 598 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 FOXA1P55317 472 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 PRKAA1Q13131 559 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 C18orf21Q32NC0 220 aaPredicted RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 AARS2Q5JTZ9 985 aaKnown RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 ZNF362Q5T0B9 420 aaPredicted RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 PSAPL1Q6NUJ1 521 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 CUZD1Q86UP6 607 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 HS6ST3Q8IZP7 471 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 ZNF366Q8N895 744 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 SLC2A11Q9BYW1 496 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 CXorf21Q9HAI6 301 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 TREX1Q9NSU2 369 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 CLEC4EQ9ULY5 219 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 CPQQ9Y646 472 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 A0A1B0GTL3 188 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 SMAD6O43541 496 aaKnown RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 CST5P28325 142 aaPredicted RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 ALDH3B2P48448 385 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 COL9A2Q14055 689 aaPredicted RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 FUT11Q495W5 492 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 PERM1Q5SV97 790 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 TMEM214Q6NUQ4 689 aaKnown RBP14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 GPR180Q86V85 440 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 VN1R3Q9BXE9 311 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 DRC3Q9H069 523 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 SACM1LQ9NTJ5 587 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 SPG21Q9NZD8 308 aa14.36□□□□□ -0.11
SHROOM1-208ENST00000617339 A0A1W2PRU2 124 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 MATN2O00339 956 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 ZNF182P17025 639 aaPredicted RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 MC4RP32245 332 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 GGT5P36269 586 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 PPARGP37231 505 aaPredicted RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 NAB1Q13506 487 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 MRNIPQ6NTE8 343 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 CLEC14AQ86T13 490 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 TMEM151AQ8N4L1 468 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 TMEM199Q8N511 208 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 MDGA1Q8NFP4 955 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 APBB2Q92870 758 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 BORCS5Q969J3 196 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 TUBGCP3Q96CW5 907 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 C1orf50Q9BV19 199 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 POLR1BQ9H9Y6 1135 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 RNF112Q9ULX5 631 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 PDCD11Q14690 1871 aaKnown RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 H3BMM5 538 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 CLTBP09497 229 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 KIAA0930Q6ICG6 404 aaPredicted RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 ZNF549Q6P9A3 640 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 CALML6Q8TD86 181 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 SLC22A17Q8WUG5 538 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 C1orf74Q96LT6 269 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 BIRC8Q96P09 236 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 SLC30A3Q99726 388 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 MRPL57Q9BQC6 102 aaKnown RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 SOX17Q9H6I2 414 aaPredicted RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 EFCAB1Q9HAE3 211 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 MKS1Q9NXB0 559 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 ZMYM5Q9UJ78 669 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 KRT87PA6NCN2 255 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 NPEPPSL1A6NEC2 478 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 SH3BGRLO75368 114 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 IPO13O94829 963 aaKnown RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 KCNH1O95259 989 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 ATXN1LP0C7T5 689 aaKnown RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 ATP5F1P24539 256 aaPredicted RBP14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 IL10RBQ08334 325 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 FAM26DQ5JW98 314 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 GANCQ8TET4 914 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 LPGAT1Q92604 370 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 PRDM16Q9HAZ2 1276 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 IGSF5Q9NSI5 407 aa14.35□□□□□ -0.11
SHROOM1-208ENST00000617339 TRIM24O15164 1050 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 AXIN1O15169 862 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 PRAMEF11O60813 436 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 BCAS2O75934 225 aaPredicted RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 CYBBP04839 570 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 PRDX3P30048 256 aaKnown RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 STK19P49842 368 aaPredicted RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 EIF4EBP2Q13542 120 aaPredicted RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 DET1Q7L5Y6 550 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 SNX29P2Q8IUI4 249 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 RAVER1Q8IY67 606 aaKnown RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 APCDD1Q8J025 514 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 IGSF21Q96ID5 467 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 GPR78Q96P69 363 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 OSBPL11Q9BXB4 747 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 OLA1Q9NTK5 396 aaKnown RBP14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 NSMCE4AQ9NXX6 385 aa14.34□□□□□ -0.11
SHROOM1-208ENST00000617339 SEPT3Q9UH03 358 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms