RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 EBF2Q9HAK2 575 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 CIDEBQ9UHD4 219 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 DGKBQ9Y6T7 804 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 H3BM21 787 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 INSIG1O15503 277 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 DUSP11O75319 330 aaKnown RBP13.9□□□□□ -0.18
CPSF1-212ENST00000616140 CLDN9O95484 217 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 TIGD5Q53EQ6 642 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 CAPN13Q6MZZ7 669 aaPredicted RBP13.9□□□□□ -0.18
CPSF1-212ENST00000616140 SLC34A3Q8N130 599 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 OR52B2Q96RD2 323 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 ZNF607Q96SK3 696 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 SLITRK2Q9H156 845 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 RBPJLQ9UBG7 517 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 TEX264Q9Y6I9 313 aa13.9□□□□□ -0.18
CPSF1-212ENST00000616140 NEDD8-MDP1E9PL57 170 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 AP3D1O14617 1153 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 PPEF2O14830 753 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 BCKDKO14874 412 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 PRG2P13727 222 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 SSR2P43308 183 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 CACNG1Q06432 222 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 ZNF846Q147U1 533 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 VARS2Q5ST30 1063 aaKnown RBP13.9□□□□□ -0.19
CPSF1-212ENST00000616140 NCBP2-AS2Q69YL0 99 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 RAVER1Q8IY67 606 aaKnown RBP13.9□□□□□ -0.19
CPSF1-212ENST00000616140 CHPFQ8IZ52 775 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 CAMKK1Q8N5S9 505 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 ZBTB2Q8N680 514 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 OR4A15Q8NGL6 344 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 RBM4BQ9BQ04 359 aaKnown RBP13.9□□□□□ -0.19
CPSF1-212ENST00000616140 RBM4Q9BWF3 364 aaKnown RBP13.9□□□□□ -0.19
CPSF1-212ENST00000616140 CMTM6Q9NX76 183 aa13.9□□□□□ -0.19
CPSF1-212ENST00000616140 MYH2Q9UKX2 1941 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 MON2Q7Z3U7 1717 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 OR51F1A6NGY5 319 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 SLC28A2O43868 658 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 SPAM1P38567 509 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 SLC26A3P40879 764 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 FKBP1BP68106 108 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 SATL1Q86VE3 508 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 POMGNT2Q8NAT1 580 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 ROPN1LQ96C74 230 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 CHID1Q9BWS9 393 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 MIOSQ9NXC5 875 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 RICTORQ6R327 1708 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 C9IYK1 514 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.89□□□□□ -0.19
CPSF1-212ENST00000616140 TFECO14948 347 aaPredicted RBP13.89□□□□□ -0.19
CPSF1-212ENST00000616140 IRAK2O43187 625 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 NDUFB5O43674 189 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 NDST2P52849 883 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 GJA9P57773 515 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 POU5F1Q01860 360 aaKnown RBP13.89□□□□□ -0.19
CPSF1-212ENST00000616140 IL10RBQ08334 325 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 ADGRE1Q14246 886 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 PLEKHG4Q58EX7 1191 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 MZT2BQ6NZ67 158 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 C17orf64Q86WR6 236 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 PIH1D2Q8WWB5 315 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 XAGE5Q8WWM1 108 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 NTAN1Q96AB6 310 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 TIFAQ96CG3 184 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 CXorf40BQ96DE9 158 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 CLIP3Q96DZ5 547 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 FCRL5Q96RD9 977 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 TNKS2Q9H2K2 1166 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 GTF2IRD1Q9UHL9 959 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 SESN1Q9Y6P5 492 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 OR2AG2A6NM03 316 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 HAT1O14929 419 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 SIX3O95343 332 aaPredicted RBP13.89□□□□□ -0.19
CPSF1-212ENST00000616140 XRCC1P18887 633 aaPredicted RBP13.89□□□□□ -0.19
CPSF1-212ENST00000616140 SLC25A11Q02978 314 aaKnown RBP13.89□□□□□ -0.19
CPSF1-212ENST00000616140 FAM174BQ3ZCQ3 159 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 C2orf73Q8N5S3 287 aaPredicted RBP13.89□□□□□ -0.19
CPSF1-212ENST00000616140 MCMBPQ9BTE3 642 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 RNF39Q9H2S5 420 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 MUC13Q9H3R2 512 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 FANCEQ9HB96 536 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 NUDT4Q9NZJ9 180 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 PPM1HQ9ULR3 514 aa13.89□□□□□ -0.19
CPSF1-212ENST00000616140 PEAK1Q9H792 1746 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 OR6A2O95222 327 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 ESR1P03372 595 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 KCNJ11Q14654 390 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 KHDRBS2Q5VWX1 349 aaKnown RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 RNF44Q7L0R7 432 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 CRYBG2Q8N1P7 616 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 OR52J3Q8NH60 311 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 TRMT13Q9NUP7 481 aaKnown RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 OXSMQ9NWU1 459 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 ZFP37Q9Y6Q3 630 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 FAM159BA6NKW6 160 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 ENO2P09104 434 aaPredicted RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 CTSEP14091 401 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 MAPKAPK2P49137 400 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 CHIT1Q13231 466 aa13.88□□□□□ -0.19
CPSF1-212ENST00000616140 CWF19L1Q69YN2 538 aaKnown RBP13.88□□□□□ -0.19
CPSF1-212ENST00000616140 FUT10Q6P4F1 479 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms