RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 DHRS7Q9Y394 339 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 IGLON5A6NGN9 336 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 KLF11O14901 512 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 MTX2O75431 263 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 APOA4P06727 396 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 PYGLP06737 847 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 FGF3P11487 239 aaPredicted RBP14.1□□□□□ -0.15
USP39-220ENST00000613444 CPA3P15088 417 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 NDUFV2P19404 249 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 CHRM3P20309 590 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 SKIV2L2P42285 1042 aaKnown RBP14.1□□□□□ -0.15
USP39-220ENST00000613444 ACAP2Q15057 778 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 AGERQ15109 404 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 SEL1L3Q68CR1 1132 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 PTRHD1Q6GMV3 140 aaKnown RBP14.1□□□□□ -0.15
USP39-220ENST00000613444 C10orf107Q8IVU9 208 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 CCDC63Q8NA47 563 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 PTERQ96BW5 349 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 SIPA1Q96FS4 1042 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 MRPL57Q9BQC6 102 aaKnown RBP14.1□□□□□ -0.15
USP39-220ENST00000613444 MANSC1Q9H8J5 431 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 SYTL2Q9HCH5 934 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 SLCO1B3Q9NPD5 702 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 CD93Q9NPY3 652 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 LATS2Q9NRM7 1088 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 IKZF3Q9UKT9 509 aa14.1□□□□□ -0.15
USP39-220ENST00000613444 ZBTB14O43829 449 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 FAM107AO95990 144 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 KCNC1P48547 511 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 ADPRHP54922 357 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 STARD6P59095 220 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 CCDC15Q0P6D6 951 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 FGL2Q14314 439 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 GAS6Q14393 721 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 ZNF648Q5T619 568 aaPredicted RBP14.09□□□□□ -0.15
USP39-220ENST00000613444 NUDCD3Q8IVD9 361 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 RDH11Q8TC12 318 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 LRRC8CQ8TDW0 803 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 TSNARE1Q96NA8 513 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 DERL2Q9GZP9 239 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 MRPL46Q9H2W6 279 aaKnown RBP14.09□□□□□ -0.15
USP39-220ENST00000613444 FGFR1OP2Q9NVK5 253 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 TRMT6Q9UJA5 497 aaKnown RBP14.09□□□□□ -0.15
USP39-220ENST00000613444 CHURC1-FNTBB4DL54 471 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 E5RI56 91 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 TM7SF2O76062 418 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 PCDH8O95206 1070 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 SLC25A14O95258 325 aaPredicted RBP14.09□□□□□ -0.15
USP39-220ENST00000613444 VIMP08670 466 aaKnown RBP14.09□□□□□ -0.15
USP39-220ENST00000613444 ATP1B2P14415 290 aaPredicted RBP14.09□□□□□ -0.15
USP39-220ENST00000613444 GABRG2P18507 467 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 CHI3L2Q15782 390 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 TMEM259Q4ZIN3 620 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 ZYG11AQ6WRX3 759 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 USP30Q70CQ3 517 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 BCAS4Q8TDM0 211 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 SCYL1Q96KG9 808 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 C2orf42Q9NWW7 574 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 FZD4Q9ULV1 537 aa14.09□□□□□ -0.15
USP39-220ENST00000613444 ITGB6P18564 788 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 TFEBP19484 476 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 WSCD2Q2TBF2 565 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 LDLRAP1Q5SW96 308 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 CGB2Q6NT52 195 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 UGT3A1Q6NUS8 523 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 CPNE9Q8IYJ1 553 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 SYNPOQ8N3V7 929 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 PLA2G15Q8NCC3 412 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 OR14C36Q8NHC7 312 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 RAB3IL1Q8TBN0 382 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 EEF1AKMT1Q8WVE0 214 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 FUBP1Q96AE4 644 aaKnown RBP14.08□□□□□ -0.16
USP39-220ENST00000613444 LMAN1LQ9HAT1 526 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 SARS2Q9NP81 518 aaKnown RBP14.08□□□□□ -0.16
USP39-220ENST00000613444 LTB4R2Q9NPC1 389 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 OXSMQ9NWU1 459 aa14.08□□□□□ -0.16
USP39-220ENST00000613444 TCRBV21S2A2A0A5A6 115 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 INPP4BO15327 924 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 DLX3O60479 287 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 TRIM16O95361 564 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 AKT1P31749 480 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 KPNA2P52292 529 aaKnown RBP14.07□□□□□ -0.16
USP39-220ENST00000613444 BST1Q10588 318 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 OR4D1Q15615 310 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 TTC31Q49AM3 519 aaPredicted RBP14.07□□□□□ -0.16
USP39-220ENST00000613444 RAET1GQ6H3X3 334 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 ATG14Q6ZNE5 492 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 ZCCHC23Q6ZST2 131 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 DET1Q7L5Y6 550 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 NKAPQ8N5F7 415 aaKnown RBP14.07□□□□□ -0.16
USP39-220ENST00000613444 GANCQ8TET4 914 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 INPP5DQ92835 1189 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 SGF29Q96ES7 293 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 PDLIM5Q96HC4 596 aaKnown RBP14.07□□□□□ -0.16
USP39-220ENST00000613444 C1QTNF2Q9BXJ5 285 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 C20orf27Q9GZN8 174 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 FAM107BQ9H098 131 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 ALG9Q9H6U8 611 aa14.07□□□□□ -0.16
USP39-220ENST00000613444 EDF1O60869 148 aaKnown RBP14.07□□□□□ -0.16
USP39-220ENST00000613444 SNNO75324 88 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms