RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 BPIP17213 487 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 AMD1P17707 334 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 ARHGAP25P42331 645 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 NOP2P46087 812 aaKnown RBP12.96□□□□□ -0.33
RPS28-204ENST00000602140 DYNLT1P63172 113 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 TLE1Q04724 770 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 FOXM1Q08050 763 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 CDC20Q12834 499 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 KHDC1Q4VXA5 237 aaKnown RBP12.96□□□□□ -0.33
RPS28-204ENST00000602140 ODF2Q5BJF6 829 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 CCDC70Q6NSX1 233 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 LRRTM4Q86VH4 590 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 RFX6Q8HWS3 928 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 RNF25Q96BH1 459 aaPredicted RBP12.96□□□□□ -0.33
RPS28-204ENST00000602140 RNF31Q96EP0 1072 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 TGM7Q96PF1 710 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 DNAJC7Q99615 494 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 TRIT1Q9H3H1 467 aaKnown RBP12.96□□□□□ -0.33
RPS28-204ENST00000602140 GLOD4Q9HC38 313 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 BPIFA1Q9NP55 256 aa12.96□□□□□ -0.33
RPS28-204ENST00000602140 SIDT1Q9NXL6 827 aaKnown RBP12.96□□□□□ -0.33
RPS28-204ENST00000602140 A0A0A6YYK5 440 aaPredicted RBP12.95□□□□□ -0.34
RPS28-204ENST00000602140 CYSRT1A8MQ03 144 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 VEGFDO43915 354 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 PMPCBO75439 489 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 CDK14O94921 469 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 NDST3O95803 873 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 TNNT1P13805 278 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 RPL10P27635 214 aaKnown RBP12.95□□□□□ -0.34
RPS28-204ENST00000602140 STAT5AP42229 794 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 SEPHS1P49903 392 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 SLC14A2Q15849 920 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 SKIDA1Q1XH10 827 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 TEX44Q53QW1 395 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 ABRAXAS1Q6UWZ7 409 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 ZNF547Q8IVP9 402 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 STARD8Q92502 1023 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 CHP1Q99653 195 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 TIMM29Q9BSF4 260 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 ULBP3Q9BZM4 244 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 SPTLC3Q9NUV7 552 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 ZNHIT6Q9NWK9 470 aaKnown RBP12.95□□□□□ -0.34
RPS28-204ENST00000602140 UBP1Q9NZI7 540 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 TMPRSS11EQ9UL52 423 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 HYOU1Q9Y4L1 999 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 SPO11Q9Y5K1 396 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 HECTD1Q9ULT8 2610 aa12.95□□□□□ -0.34
RPS28-204ENST00000602140 PRR19A6NJB7 356 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 OR52A4PA6NMU1 304 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 RASSF9O75901 435 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 BRAFP15056 766 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 ZNF28P17035 718 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 TCN2P20062 427 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 F8A1P23610 371 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 PTPN3P26045 913 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 OAS2P29728 719 aaKnown RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 LEPRP48357 1165 aaKnown RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 DRG2P55039 364 aaKnown RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 SH3BP2P78314 561 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 MC1RQ01726 317 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 TMEM115Q12893 351 aaPredicted RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 TRIM14Q14142 442 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 MAP7Q14244 749 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 DEFB109BQ30KR1 87 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 ATP13A5Q4VNC0 1218 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 ATP1A1-AS1Q5TC04 95 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 LRRC38Q5VT99 294 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 C16orf46Q6P387 395 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 MFSD7Q6UXD7 560 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 TRAPPC5Q8IUR0 188 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 RHOT2Q8IXI1 618 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 ESX1Q8N693 406 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 C9orf43Q8TAL5 461 aaPredicted RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 GDAP1Q8TB36 358 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 TEKT5Q96M29 485 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 VPS35Q96QK1 796 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 OR6C1Q96RD1 312 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 SRPK1Q96SB4 655 aaKnown RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 SLC40A1Q9NP59 571 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 ZNF71Q9NQZ8 489 aaPredicted RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 POT1Q9NUX5 634 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 SAE1Q9UBE0 346 aaPredicted RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 TRIM10Q9UDY6 481 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 MRPS18BQ9Y676 258 aaKnown RBP12.94□□□□□ -0.34
RPS28-204ENST00000602140 RPS6KL1Q9Y6S9 549 aa12.94□□□□□ -0.34
RPS28-204ENST00000602140 TOX3O15405 576 aaPredicted RBP12.93□□□□□ -0.34
RPS28-204ENST00000602140 KIF1CO43896 1103 aaKnown RBP12.93□□□□□ -0.34
RPS28-204ENST00000602140 IDSP22304 550 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 GPR18Q14330 331 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 PRKD1Q15139 912 aaPredicted RBP12.93□□□□□ -0.34
RPS28-204ENST00000602140 NOMO1Q15155 1222 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 LLGL1Q15334 1064 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 AGAP9Q5VTM2 703 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 C6orf15Q6UXA7 325 aaPredicted RBP12.93□□□□□ -0.34
RPS28-204ENST00000602140 WASH2PQ6VEQ5 465 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 C11orf96Q7Z7L8 435 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 RASGRP3Q8IV61 690 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 RHOT1Q8IXI2 618 aa12.93□□□□□ -0.34
RPS28-204ENST00000602140 TFB1MQ8WVM0 346 aaKnown RBP12.93□□□□□ -0.34
RPS28-204ENST00000602140 APOBEC4Q8WW27 367 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms