RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 C1QTNF9P0C862 333 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 F3P13726 295 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 HALP42357 657 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 PAFAH1B1P43034 410 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 PTPRCAPQ14761 206 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 CDCP2Q5VXM1 449 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 TMEM220Q6QAJ8 160 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 TAS2R42Q7RTR8 314 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 AMZ2Q86W34 360 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 TRIM48Q8IWZ4 208 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 NAGSQ8N159 534 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 Q8N9G6 341 aaPredicted RBP19.09■□□□□ 0.65
UPF1-212ENST00000601689 AHCYL2Q96HN2 611 aaKnown RBP19.09■□□□□ 0.65
UPF1-212ENST00000601689 DNAJC1Q96KC8 554 aaKnown RBP19.09■□□□□ 0.65
UPF1-212ENST00000601689 TMEM74Q96NL1 305 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 RANBP9Q96S59 729 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 COPS8Q99627 209 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 STRADBQ9C0K7 418 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 VPS37BQ9H9H4 285 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 KCTD3Q9Y597 815 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 RNF215Q9Y6U7 377 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 PDZK1P1A8MUH7 402 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 ALDH4A1P30038 563 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 COILP38432 576 aaPredicted RBP19.08■□□□□ 0.64
UPF1-212ENST00000601689 NPY2RP49146 381 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 FNTAP49354 379 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 MAZP56270 477 aaKnown RBP19.08■□□□□ 0.64
UPF1-212ENST00000601689 CACNG1Q06432 222 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 MSLNQ13421 630 aaPredicted RBP19.08■□□□□ 0.64
UPF1-212ENST00000601689 CLPPQ16740 277 aaPredicted RBP19.08■□□□□ 0.64
UPF1-212ENST00000601689 PLA2G4EQ3MJ16 856 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 ZNF449Q6P9G9 518 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 LSMEM2Q8N112 164 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 BEND7Q8N7W2 519 aaPredicted RBP19.08■□□□□ 0.64
UPF1-212ENST00000601689 PEX13Q92968 403 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 CDKN2AIPNLQ96HQ2 116 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 RUNDC3BQ96NL0 473 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 DPYSL5Q9BPU6 564 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 CASS4Q9NQ75 786 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 PIH1D1Q9NWS0 290 aaKnown RBP19.08■□□□□ 0.64
UPF1-212ENST00000601689 AKAP7Q9P0M2 348 aaPredicted RBP19.08■□□□□ 0.64
UPF1-212ENST00000601689 ANAPC5Q9UJX4 755 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 DNAJC16Q9Y2G8 782 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 SAR1BQ9Y6B6 198 aa19.08■□□□□ 0.64
UPF1-212ENST00000601689 SPEGQ15772 3267 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 PHF2O75151 1096 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 TPSB2P20231 275 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 FASLGP48023 281 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 PRAMEP78395 509 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 CCL7P80098 99 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 HHEXQ03014 270 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 GPS1Q13098 491 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 PPP1R7Q15435 360 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 TPSAB1Q15661 275 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 CYP1B1Q16678 543 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 ISXQ2M1V0 245 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 MAP9Q49MG5 647 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 LYPLAL1Q5VWZ2 237 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 IYDQ6PHW0 289 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 PRUNE1Q86TP1 453 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 PIM3Q86V86 326 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 C17orf82Q86X59 251 aaPredicted RBP19.07■□□□□ 0.64
UPF1-212ENST00000601689 SFRP1Q8N474 314 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 COG1Q8WTW3 980 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 ZCCHC14Q8WYQ9 949 aaKnown RBP19.07■□□□□ 0.64
UPF1-212ENST00000601689 IL22Q9GZX6 179 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 KCNK4Q9NYG8 393 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 TBC1D29Q9UFV1 150 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 RIMKLBQ9ULI2 386 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 PYCARDQ9ULZ3 195 aa19.07■□□□□ 0.64
UPF1-212ENST00000601689 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.06■□□□□ 0.64
UPF1-212ENST00000601689 TRBV23OR9-2A0A075B6M9 112 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 MROH6A6NGR9 719 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 OR2AG2A6NM03 316 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 USP27XA6NNY8 438 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 QSOX1O00391 747 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 POP7O75817 140 aaKnown RBP19.06■□□□□ 0.64
UPF1-212ENST00000601689 VIPP01282 170 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 ATP1B2P14415 290 aaPredicted RBP19.06■□□□□ 0.64
UPF1-212ENST00000601689 VPS41P49754 854 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 CLDN6P56747 220 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 GPLD1P80108 840 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 XIAPP98170 497 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 TRIP13Q15645 432 aaPredicted RBP19.06■□□□□ 0.64
UPF1-212ENST00000601689 PCID2Q5JVF3 399 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 FNBP1LQ5T0N5 605 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 SPRED1Q7Z699 444 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 NXPE1Q8N323 547 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 RASGEF1AQ8N9B8 481 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 GLIS1Q8NBF1 620 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 OR10G6Q8NH81 332 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 SLC37A2Q8TED4 501 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 SARS2Q9NP81 518 aaKnown RBP19.06■□□□□ 0.64
UPF1-212ENST00000601689 ZDHHC3Q9NYG2 299 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 RNF14Q9UBS8 474 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 TMPRSS11EQ9UL52 423 aa19.06■□□□□ 0.64
UPF1-212ENST00000601689 AGAP14A8MT82 685 aa19.05■□□□□ 0.64
UPF1-212ENST00000601689 NTN3O00634 580 aaPredicted RBP19.05■□□□□ 0.64
UPF1-212ENST00000601689 GAPDHSO14556 408 aaPredicted RBP19.05■□□□□ 0.64
UPF1-212ENST00000601689 CPNE6O95741 557 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms