RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 PCDHA3Q9Y5H8 950 aa18.5■□□□□ 0.55
PNKP-213ENST00000599543 hCG_1818297A0A087WSY0 165 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 A8MU76 341 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 KRT86O43790 486 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 NRDCO43847 1150 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 CST8O60676 142 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 PECAM1P16284 738 aaPredicted RBP18.49■□□□□ 0.55
PNKP-213ENST00000599543 ARSDP51689 593 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 LINC00303Q3SY05 128 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 ZNF648Q5T619 568 aaPredicted RBP18.49■□□□□ 0.55
PNKP-213ENST00000599543 CRTC3Q6UUV7 619 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 BZW1Q7L1Q6 419 aaKnown RBP18.49■□□□□ 0.55
PNKP-213ENST00000599543 TMC3Q7Z5M5 1100 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 RCOR2Q8IZ40 523 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 EXD3Q8N9H8 876 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 SPATA22Q8NHS9 363 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 NKD1Q969G9 470 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 GLYATL1Q969I3 302 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 TEFMQ96QE5 360 aaKnown RBP18.49■□□□□ 0.55
PNKP-213ENST00000599543 TSGA10Q9BZW7 698 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 EPB41L1Q9H4G0 881 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 KLC4Q9NSK0 619 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 PDP2Q9P2J9 529 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 NFKBIL1Q9UBC1 381 aaPredicted RBP18.49■□□□□ 0.55
PNKP-213ENST00000599543 CPNE7Q9UBL6 633 aa18.49■□□□□ 0.55
PNKP-213ENST00000599543 MYO18BQ8IUG5 2567 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 ZNF106Q9H2Y7 1883 aaKnown RBP18.48■□□□□ 0.55
PNKP-213ENST00000599543 DDX3YO15523 660 aaKnown RBP18.48■□□□□ 0.55
PNKP-213ENST00000599543 PMPCBO75439 489 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 NDST3O95803 873 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 MT-CYBP00156 380 aaPredicted RBP18.48■□□□□ 0.55
PNKP-213ENST00000599543 WT1P19544 449 aaPredicted RBP18.48■□□□□ 0.55
PNKP-213ENST00000599543 UGT1A3P35503 534 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 NR2C2P49116 596 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 CYP4F2P78329 520 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 TAZQ16635 292 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 INSCQ1MX18 579 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 PLA2G4EQ3MJ16 856 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 TEX44Q53QW1 395 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 ANKS6Q68DC2 871 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 TADA1Q96BN2 335 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 RBM41Q96IZ5 413 aaKnown RBP18.48■□□□□ 0.55
PNKP-213ENST00000599543 SRPK1Q96SB4 655 aaKnown RBP18.48■□□□□ 0.55
PNKP-213ENST00000599543 FAM118BQ9BPY3 351 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 GLOD4Q9HC38 313 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 PRDM8Q9NQV8 689 aa18.48■□□□□ 0.55
PNKP-213ENST00000599543 CCDC66A2RUB6 948 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 SLC28A2O43868 658 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 FAM87AP0C7U9 286 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 PYGMP11217 842 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 PTPN3P26045 913 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 TNNT3P45378 269 aaPredicted RBP18.47■□□□□ 0.55
PNKP-213ENST00000599543 CLCNKAP51800 687 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 RWDD2BP57060 319 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 NFATC3Q12968 1075 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 TFDP2Q14188 446 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 PRKD1Q15139 912 aaPredicted RBP18.47■□□□□ 0.55
PNKP-213ENST00000599543 TFDP3Q5H9I0 405 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 ARHGAP22Q7Z5H3 698 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 ADGRG6Q86SQ4 1221 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 LRRTM4Q86VH4 590 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 CACNA2D3Q8IZS8 1091 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 SYCE1Q8N0S2 351 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 BMPERQ8N8U9 685 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 TFB1MQ8WVM0 346 aaKnown RBP18.47■□□□□ 0.55
PNKP-213ENST00000599543 CALR3Q96L12 384 aaKnown RBP18.47■□□□□ 0.55
PNKP-213ENST00000599543 FAM117AQ9C073 453 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 C10orf88Q9H8K7 445 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 UBP1Q9NZI7 540 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 KLHL3Q9UH77 587 aa18.47■□□□□ 0.55
PNKP-213ENST00000599543 HEMK1Q9Y5R4 338 aaPredicted RBP18.47■□□□□ 0.55
PNKP-213ENST00000599543 LILRA5A6NI73 299 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 CHUKO15111 745 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 KMOO15229 486 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 SFTPCP11686 197 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 BPIP17213 487 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 SEPT7Q16181 437 aaKnown RBP18.46■□□□□ 0.55
PNKP-213ENST00000599543 TBR1Q16650 682 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 CEACAM20Q6UY09 585 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 PRICKLE2Q7Z3G6 844 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 TRIM48Q8IWZ4 208 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 RNF10Q8N5U6 811 aaKnown RBP18.46■□□□□ 0.55
PNKP-213ENST00000599543 HTR3CQ8WXA8 447 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 TEKT5Q96M29 485 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 PLEKHG4BQ96PX9 1271 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 CTRCQ99895 268 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 TBC1D10AQ9BXI6 508 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 TRMT1Q9NXH9 659 aaKnown RBP18.46■□□□□ 0.55
PNKP-213ENST00000599543 DNAJC16Q9Y2G8 782 aa18.46■□□□□ 0.55
PNKP-213ENST00000599543 PDZK1P1A8MUH7 402 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 MTSS1O43312 755 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 VEGFDO43915 354 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 RAD1O60671 282 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 MTX2O75431 263 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 VIPP01282 170 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 LIFP15018 202 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 ZNF7P17097 686 aaPredicted RBP18.45■□□□□ 0.54
PNKP-213ENST00000599543 UBE2IP63279 158 aaKnown RBP18.45■□□□□ 0.54
PNKP-213ENST00000599543 MC2RQ01718 297 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 PLXDC1Q8IUK5 500 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms