RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PPM1DO15297 605 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 SGTAO43765 313 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 KIF5CO60282 957 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 DXOO77932 396 aaKnown RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 RPLP0P05388 317 aaKnown RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 ZSCAN5DPP0CG00 497 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 ZNF7P17097 686 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 MSNP26038 577 aaKnown RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 CCKBRP32239 447 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 GRIA1P42261 906 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 KCNJ1P48048 391 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 CTSCP53634 463 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 SQSTM1Q13501 440 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 POU6F1Q14863 301 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 CLPPQ16740 277 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 TTC27Q6P3X3 843 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 IYDQ6PHW0 289 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 CRTC3Q6UUV7 619 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 WASH2PQ6VEQ5 465 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 TAB3Q8N5C8 712 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 RASGEF1AQ8N9B8 481 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 ACTRT1Q8TDG2 376 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 COG1Q8WTW3 980 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 LIN37Q96GY3 246 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 RANBP9Q96S59 729 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 SARS2Q9NP81 518 aaKnown RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 WASH6PQ9NQA3 447 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 TRMT1Q9NXH9 659 aaKnown RBP15.9■□□□□ 0.14
TRIM28-213ENST00000598355 ZMIZ1Q9ULJ6 1067 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 PYCARDQ9ULZ3 195 aa15.9■□□□□ 0.14
TRIM28-213ENST00000598355 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-213ENST00000598355 KIR2DS5A0A0G2JLQ3 304 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 A0A0G2JNG1 304 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 KIR2DS3K7RE56 304 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 PGRMC1O00264 195 aaKnown RBP15.89■□□□□ 0.13
TRIM28-213ENST00000598355 SLC2A4P14672 509 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 TPH1P17752 444 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 MAGEA6P43360 314 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 UBE2IP63279 158 aaKnown RBP15.89■□□□□ 0.13
TRIM28-213ENST00000598355 ACVR1Q04771 509 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 ZFP36L1Q07352 338 aaKnown RBP15.89■□□□□ 0.13
TRIM28-213ENST00000598355 KIR2DS5Q14953 304 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 INSCQ1MX18 579 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 GPR33Q49SQ1 333 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 BCL7AQ4VC05 210 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 AGAP9Q5VTM2 703 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 XKR5Q6UX68 686 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 SNX20Q7Z614 316 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 SLITRK4Q8IW52 837 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 NXPE1Q8N323 547 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 PEX13Q92968 403 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 ULK4Q96C45 1275 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 MS4A14Q96JA4 679 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 GFM1Q96RP9 751 aaKnown RBP15.89■□□□□ 0.13
TRIM28-213ENST00000598355 ASB8Q9H765 288 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 KLC4Q9NSK0 619 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 PIH1D1Q9NWS0 290 aaKnown RBP15.89■□□□□ 0.13
TRIM28-213ENST00000598355 NEU2Q9Y3R4 380 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 DNMT3AQ9Y6K1 912 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-213ENST00000598355 LAMA5O15230 3695 aa15.89■□□□□ 0.13
TRIM28-213ENST00000598355 ADAMTS20P59510 1910 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 ZFHX4Q86UP3 3567 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 OR5K4A6NMS3 321 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 B4GAT1O43505 415 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 KCNJ13O60928 360 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 APRTP07741 180 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 BRAFP15056 766 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 ITGALP20701 1170 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 CYP4F3Q08477 520 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 GTF2H3Q13889 308 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 GSE1Q14687 1217 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 ABRAXAS1Q6UWZ7 409 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 ZNF534Q76KX8 674 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 TMPRSS9Q7Z410 1059 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 B3GNT8Q7Z7M8 397 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 TRAPPC5Q8IUR0 188 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 AVL9Q8NBF6 648 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 OR13J1Q8NGT2 312 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 GDAP1Q8TB36 358 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 CCDC97Q96F63 343 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-213ENST00000598355 CDKN2AIPNLQ96HQ2 116 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 ZNF514Q96K75 400 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-213ENST00000598355 LINC00615Q96LM1 132 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-213ENST00000598355 NAP1L3Q99457 506 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-213ENST00000598355 AHCTF1Q8WYP5 2266 aa15.88■□□□□ 0.13
TRIM28-213ENST00000598355 CFAP47Q6ZTR5 3102 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 IGHV1OR21-1A0A087WYE8 117 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 HEATR9A2RTY3 570 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 KLHL33A6NCF5 533 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 LILRA5A6NI73 299 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 RHPN2P1A8MT19 583 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 E7EVH7 732 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 CCL22O00626 93 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 TPSB2P20231 275 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 MC4RP32245 332 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 FOXN2P32314 431 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 LSSP48449 732 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 PRLHRP49683 370 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 ARSDP51689 593 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 GPLD1P80108 840 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms