RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-213	ENST00000597325	TBC1D3F	A6NER0	549 aa	Predicted RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	FAM47DP	A6NHR8	397 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	ENO4	A6NNW6	628 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	TBC1D3L	B9A6J9	549 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	CCL22	O00626	93 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	BRINP1	O60477	761 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	MMP20	O60882	483 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	RNGTT	O60942	597 aa	Known RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	TM7SF2	O76062	418 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	PRAMEF1	O95521	474 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	SEMA4F	O95754	770 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	IGLV3-19	P01714	112 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	TBC1D3H	P0C7X1	549 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	ERVK-10	P10266	1014 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	BPI	P17213	487 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	ITGAL	P20701	1170 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	MC4R	P32245	332 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	ETV3	P41162	512 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	SPINT3	P49223	89 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	DCDC1	P59894	354 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	NAB1	Q13506	487 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	STAT4	Q14765	748 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	CASP8	Q14790	479 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	UAP1	Q16222	522 aa	Predicted RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	FASTKD1	Q53R41	847 aa	Known RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	ZRANB3	Q5FWF4	1079 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	AARS2	Q5JTZ9	985 aa	Known RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	WDR45B	Q5MNZ6	344 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	TBC1D3G	Q6DHY5	549 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	TBC1D3C	Q6IPX1	549 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	MRNIP	Q6NTE8	343 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	NEK5	Q6P3R8	708 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	TRMT10B	Q6PF06	316 aa	Known RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	IL27RA	Q6UWB1	636 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	FAM151B	Q6UXP7	276 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	ZNF574	Q6ZN55	896 aa	Predicted RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	CTAGE3P	Q8IX95	158 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	NRSN1	Q8IZ57	195 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	TBC1D3	Q8IZP1	549 aa	Predicted RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	CBARP	Q8N350	705 aa	Predicted RBP	11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	OR2T34	Q8NGX1	318 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	EID2B	Q96D98	161 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	DTD2	Q96FN9	168 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	CDKN2AIPNL	Q96HQ2	116 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	TBATA	Q96M53	351 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	COQ10A	Q96MF6	247 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	ACSS3	Q9H6R3	686 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	CATSPERZ	Q9NTU4	200 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	NSMCE4A	Q9NXX6	385 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	PLAA	Q9Y263	795 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	IKBKG	Q9Y6K9	419 aa		11.96	□□□□□ -0.49
SHKBP1-213	ENST00000597325	CRYBG3	Q68DQ2	2970 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325		A0A1W2PQU0	124 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	IGLON5	A6NGN9	336 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325		H7C0S8	307 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	PFDN6	O15212	129 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	SRP72	O76094	671 aa	Known RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	RECQL5	O94762	991 aa	Predicted RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	GOT2	P00505	430 aa	Known RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	NUDT17	P0C025	328 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	JUP	P14923	745 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	PSMA3	P25788	255 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	CD6	P30203	668 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	ARSD	P51689	593 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	EIF3B	P55884	814 aa	Known RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	TMPRSS3	P57727	454 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	CACNG1	Q06432	222 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	TARDBP	Q13148	414 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	SGCG	Q13326	291 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	ITGA9	Q13797	1035 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	TBC1D25	Q3MII6	688 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	KBTBD12	Q3ZCT8	623 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	SETMAR	Q53H47	684 aa	Predicted RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	CCDC157	Q569K6	752 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	HSP90AA5P	Q58FG0	334 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	UBAP2	Q5T6F2	1119 aa	Known RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	ZNF470	Q6ECI4	717 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	NEPRO	Q6NW34	567 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325		Q6ZVL8	140 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	CYS1	Q717R9	158 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	ZNF765	Q7L2R6	523 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	PTAR1	Q7Z6K3	402 aa	Predicted RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	HORMAD1	Q86X24	394 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	LMNTD2	Q8IXW0	634 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	UNC5B	Q8IZJ1	945 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	GPR26	Q8NDV2	337 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	OR4L1	Q8NH43	312 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	AP2M1	Q96CW1	435 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	TTC1	Q99614	292 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	ZSCAN5A	Q9BUG6	496 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	SPATA16	Q9BXB7	569 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	FUT8	Q9BYC5	575 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	EPB41L4B	Q9H329	900 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	ACBD3	Q9H3P7	528 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	FAM83D	Q9H4H8	585 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	PPCS	Q9HAB8	311 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	PLAC1	Q9HBJ0	212 aa		11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	IARS2	Q9NSE4	1012 aa	Known RBP	11.95	□□□□□ -0.5
SHKBP1-213	ENST00000597325	MOCS1	Q9NZB8	636 aa		11.95	□□□□□ -0.5

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