RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 LRP8Q14114 963 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 KCNJ11Q14654 390 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 LDLRAP1Q5SW96 308 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 IYDQ6PHW0 289 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 CCDC137Q6PK04 289 aaKnown RBP10.99□□□□□ -0.65
VRK3-210ENST00000596121 TMEM220Q6QAJ8 160 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 UNQ6494/PRO21346Q6UXR6 183 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 PPP1R21Q6ZMI0 780 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 FAM83HQ6ZRV2 1179 aaPredicted RBP10.99□□□□□ -0.65
VRK3-210ENST00000596121 TMPRSS9Q7Z410 1059 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 ZNF438Q7Z4V0 828 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 CACTIN-AS1Q8N1I8 211 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 GALNT15Q8N3T1 639 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 BEND7Q8N7W2 519 aaPredicted RBP10.99□□□□□ -0.65
VRK3-210ENST00000596121 DNAAF3Q8N9W5 541 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 OR13J1Q8NGT2 312 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 GDAP1Q8TB36 358 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 SLC37A2Q8TED4 501 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 CPT1BQ92523 772 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 NAT6Q93015 286 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 SGF29Q96ES7 293 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 CAPZA3Q96KX2 299 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 C19orf43Q9BQ61 176 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 EIF2B3Q9NR50 452 aaKnown RBP10.99□□□□□ -0.65
VRK3-210ENST00000596121 APPL1Q9UKG1 709 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 CLCA2Q9UQC9 943 aa10.99□□□□□ -0.65
VRK3-210ENST00000596121 ZNF106Q9H2Y7 1883 aaKnown RBP10.99□□□□□ -0.65
VRK3-210ENST00000596121 ZFC3H1O60293 1989 aaKnown RBP10.99□□□□□ -0.65
VRK3-210ENST00000596121 CELSR3Q9NYQ7 3312 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 USP24Q9UPU5 2620 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 PMS2P1A4D2B8 440 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 OR2AG2A6NM03 316 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 GPR89AB7ZAQ6 455 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 TAF4O00268 1085 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 KMOO15229 486 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 NUDT21O43809 227 aaKnown RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 SNX2O60749 519 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 PHF2O75151 1096 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 AVILO75366 819 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 CSO75390 466 aaKnown RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 POP7O75817 140 aaKnown RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 TMEM63AO94886 807 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 RPLP0P05388 317 aaKnown RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 GPR89BP0CG08 455 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 BRAFP15056 766 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 TCP1P17987 556 aaKnown RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 PTGIRP43119 386 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 MAGEA6P43360 314 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 SESN2P58004 480 aaPredicted RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 PDE1BQ01064 536 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 ACVR1Q04771 509 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 ITGA9Q13797 1035 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 TSTD2Q5T7W7 516 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 C4orf22Q6V702 233 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 DET1Q7L5Y6 550 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 SNX20Q7Z614 316 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 SPRED1Q7Z699 444 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 B3GNT8Q7Z7M8 397 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 LRRTM4Q86VH4 590 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 ZNF761Q86XN6 746 aaPredicted RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 TRAPPC5Q8IUR0 188 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 NXPE1Q8N323 547 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 SFRP1Q8N474 314 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 STYXQ8WUJ0 223 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 LRRC45Q96CN5 670 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 RANBP9Q96S59 729 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 NAPGQ99747 312 aaPredicted RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 DDX47Q9H0S4 455 aaKnown RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 ABCG4Q9H172 646 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 CHRAC1Q9NRG0 131 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 ZNF624Q9P2J8 865 aaPredicted RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 ATXN7L1Q9ULK2 861 aaPredicted RBP10.98□□□□□ -0.65
VRK3-210ENST00000596121 DNAJC16Q9Y2G8 782 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 WDR37Q9Y2I8 494 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 TCAF1Q9Y4C2 921 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 PRSS21Q9Y6M0 314 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 UNC13CQ8NB66 2214 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 APC2O95996 2303 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 DMXL2Q8TDJ6 3036 aa10.98□□□□□ -0.65
VRK3-210ENST00000596121 IGLV3-16A0A075B6K0 115 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 TPSB2P20231 275 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 ADRA1DP25100 572 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 MSNP26038 577 aaKnown RBP10.97□□□□□ -0.65
VRK3-210ENST00000596121 MGAT1P26572 445 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 CD1CP29017 333 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 FOXN2P32314 431 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 HADHAP40939 763 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 DRG2P55039 364 aaKnown RBP10.97□□□□□ -0.65
VRK3-210ENST00000596121 CFHR1Q03591 330 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 SEMA3AQ14563 771 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 NR1D2Q14995 579 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 TPSAB1Q15661 275 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 DBN1Q16643 649 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 ISXQ2M1V0 245 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 ZNF658BQ4V348 819 aaPredicted RBP10.97□□□□□ -0.65
VRK3-210ENST00000596121 ZRANB3Q5FWF4 1079 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 NKAIN2Q5VXU1 208 aa10.97□□□□□ -0.65
VRK3-210ENST00000596121 CAND1Q86VP6 1230 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms