RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 PHF19Q5T6S3 580 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 BROXQ5VW32 411 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 CRTC3Q6UUV7 619 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 FAM151BQ6UXP7 276 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 LRRC8AQ8IWT6 810 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 FAM71DQ8N9W8 422 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 OR4D9Q8NGE8 314 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 HNRNPLLQ8WVV9 542 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 KCNE4Q8WWG9 221 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 AHCYL2Q96HN2 611 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 FOXP3Q9BZS1 431 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 B3GNT4Q9C0J1 378 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 OSGEPL1Q9H4B0 414 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 KLC4Q9NSK0 619 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 TBC1D29Q9UFV1 150 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 ATXN7L1Q9ULK2 861 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 LOXL2Q9Y4K0 774 aa17.5■□□□□ 0.39
SHKBP1-204ENST00000594862 IGHV1OR21-1A0A087WYE8 117 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 PPM1DO15297 605 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 B4GAT1O43505 415 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 PRAMEF1O95521 474 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 UGT1A5P35504 534 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 TMEM115Q12893 351 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 CHRNA6Q15825 494 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 FOXR1Q6PIV2 292 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 C19orf48Q6RUI8 117 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 LINC00523Q86TU6 105 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 TRAPPC5Q8IUR0 188 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 TRIM58Q8NG06 486 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 ULK4Q96C45 1275 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 RTP4Q96DX8 246 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 PRR11Q96HE9 360 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 UCK1Q9HA47 277 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 ARFGAP3Q9NP61 516 aa17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 PCYT1BQ9Y5K3 369 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 DNMT3AQ9Y6K1 912 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-204ENST00000594862 A0A1W2PNU3 283 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 SNX2O60749 519 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 IDSP22304 550 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 CD1CP29017 333 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 PPM1FP49593 454 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 LONRF2Q1L5Z9 754 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 MEI1Q5TIA1 1274 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 AGAP9Q5VTM2 703 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 WASH2PQ6VEQ5 465 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 SLC13A5Q86YT5 568 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 RBM12BQ8IXT5 1001 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 ZNF398Q8TD17 642 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 HEXDCQ8WVB3 486 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 MAIP1Q8WWC4 291 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 APOL2Q9BQE5 337 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 TMEM121Q9BTD3 319 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 WASH6PQ9NQA3 447 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 CPNE7Q9UBL6 633 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 ACSL6Q9UKU0 697 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 ARL5AQ9Y689 179 aa17.48■□□□□ 0.39
SHKBP1-204ENST00000594862 UNC13CQ8NB66 2214 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 LILRA5A6NI73 299 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 PDZK1P1A8MUH7 402 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 CASC3O15234 703 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 LIASO43766 372 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 MTX2O75431 263 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 SRP72O76094 671 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 AP2A1O95782 977 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 GAS8O95995 478 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 RALBP11234 206 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 XRCC1P18887 633 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 MSH3P20585 1137 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 ITGALP20701 1170 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 AKT1P31749 480 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 HALP42357 657 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 LIMK2P53671 638 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 DMPKQ09013 629 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 CCDC173Q0VFZ6 552 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 ZNF648Q5T619 568 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 GPRC6AQ5T6X5 926 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 TMEM164Q5U3C3 297 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 KCTD11Q693B1 232 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 WDR74Q6RFH5 385 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 PDZD3Q86UT5 571 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 ZNF547Q8IVP9 402 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 TRIM48Q8IWZ4 208 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 SPACA3Q8IXA5 215 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 OR4K2Q8NGD2 314 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 NUDT22Q9BRQ3 303 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 RDH14Q9HBH5 336 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 LZTFL1Q9NQ48 299 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 POT1Q9NUX5 634 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 PISDQ9UG56 409 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 TMPRSS11EQ9UL52 423 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 R3HDM2Q9Y2K5 976 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 ZKSCAN5Q9Y2L8 839 aa17.47■□□□□ 0.39
SHKBP1-204ENST00000594862 IGHV5-10-1A0A0J9YXX1 117 aa17.46■□□□□ 0.39
SHKBP1-204ENST00000594862 PRR19A6NJB7 356 aa17.46■□□□□ 0.39
SHKBP1-204ENST00000594862 CFAP99D6REC4 459 aa17.46■□□□□ 0.39
SHKBP1-204ENST00000594862 NVLO15381 856 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-204ENST00000594862 BUD23O43709 281 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-204ENST00000594862 EML2O95834 649 aa17.46■□□□□ 0.39
SHKBP1-204ENST00000594862 VIPP01282 170 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms