RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 RASGEF1AQ8N9B8 481 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 SLCO2A1Q92959 643 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 COPS8Q99627 209 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 CCDC3Q9BQI4 270 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 TIMM29Q9BSF4 260 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 DDX47Q9H0S4 455 aaKnown RBP14.82□□□□□ -0.04
UPF1-202ENST00000594243 FAM96AQ9H5X1 160 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 KLC4Q9NSK0 619 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 CLCA2Q9UQC9 943 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 KCNK6Q9Y257 313 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 TCAF1Q9Y4C2 921 aa14.82□□□□□ -0.04
UPF1-202ENST00000594243 KLHL33A6NCF5 533 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 OR5K4A6NMS3 321 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 CCL22O00626 93 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 CA5AP35218 305 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 TERF1P54274 439 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 HES3Q5TGS1 186 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 ARMC3Q5W041 872 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 SYT10Q6XYQ8 523 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 CCNI2Q6ZMN8 369 aaPredicted RBP14.81□□□□□ -0.04
UPF1-202ENST00000594243 SYDE1Q6ZW31 735 aaPredicted RBP14.81□□□□□ -0.04
UPF1-202ENST00000594243 TAS2R42Q7RTR8 314 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 PCGF5Q86SE9 256 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 ZNF547Q8IVP9 402 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 ARL14Q8N4G2 192 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 CPT1BQ92523 772 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 CCDC74AQ96AQ1 378 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 TTC1Q99614 292 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 CHRAC1Q9NRG0 131 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 ZDHHC3Q9NYG2 299 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 SLC23A2Q9UGH3 650 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 RNF215Q9Y6U7 377 aa14.81□□□□□ -0.04
UPF1-202ENST00000594243 KMT2BQ9UMN6 2715 aaPredicted RBP14.8□□□□□ -0.04
UPF1-202ENST00000594243 CABIN1Q9Y6J0 2220 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 KNL1Q8NG31 2342 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 MAP1BP46821 2468 aaKnown RBP14.8□□□□□ -0.04
UPF1-202ENST00000594243 TRBV5-4A0A0C4DH59 114 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 TCRBV7S3A2A0A539 114 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 CCDC78A2IDD5 438 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 OR2AG2A6NM03 316 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 RHPN2P1A8MT19 583 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 SNX2O60749 519 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 POP7O75817 140 aaKnown RBP14.8□□□□□ -0.04
UPF1-202ENST00000594243 MT-CO3P00414 261 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 MLNP12872 115 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 F3P13726 295 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 ATP1B2P14415 290 aaPredicted RBP14.8□□□□□ -0.04
UPF1-202ENST00000594243 IDSP22304 550 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 ACRV1P26436 265 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 PRAMEP78395 509 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 ACVR1Q04771 509 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 KCTD19Q17RG1 926 aaPredicted RBP14.8□□□□□ -0.04
UPF1-202ENST00000594243 PLA2G4EQ3MJ16 856 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 FNBP1LQ5T0N5 605 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 LYPLAL1Q5VWZ2 237 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 IYDQ6PHW0 289 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 AMZ2Q86W34 360 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 SFTPA2Q8IWL1 248 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 KLHL7Q8IXQ5 586 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 MCUQ8NE86 351 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 OR13J1Q8NGT2 312 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 HDAC10Q969S8 669 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.8□□□□□ -0.046e-12■■■■■ 102
UPF1-202ENST00000594243 TRIM44Q96DX7 344 aaPredicted RBP14.8□□□□□ -0.04
UPF1-202ENST00000594243 SGF29Q96ES7 293 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 SGSM3Q96HU1 749 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 CNTNAP3BQ96NU0 1288 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 CNTNAP3Q9BZ76 1288 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 OSGEPL1Q9H4B0 414 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 STN1Q9H668 368 aaKnown RBP14.8□□□□□ -0.04
UPF1-202ENST00000594243 TBC1D29Q9UFV1 150 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 ANAPC5Q9UJX4 755 aa14.8□□□□□ -0.04
UPF1-202ENST00000594243 TRBV23OR9-2A0A075B6M9 112 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 KIR2DS5A0A0G2JLQ3 304 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 A0A0G2JNG1 304 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 MAGEB16A2A368 324 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 CCDC162PA2VCL2 907 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 KIR2DS3K7RE56 304 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 FANCGO15287 622 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 TCEA3O75764 348 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 MGAT1P26572 445 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 PPARGP37231 505 aaPredicted RBP14.79□□□□□ -0.04
UPF1-202ENST00000594243 PTGIRP43119 386 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 FASLGP48023 281 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 CDKN1CP49918 316 aaPredicted RBP14.79□□□□□ -0.04
UPF1-202ENST00000594243 ARSDP51689 593 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 CTSCP53634 463 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 MAZP56270 477 aaKnown RBP14.79□□□□□ -0.04
UPF1-202ENST00000594243 DR1Q01658 176 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 DMPKQ09013 629 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 TARDBPQ13148 414 aaKnown RBP eCLIP14.79□□□□□ -0.04
UPF1-202ENST00000594243 PTK6Q13882 451 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 KIR2DS5Q14953 304 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 CDCP2Q5VXM1 449 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 AFTPHQ6ULP2 937 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 CERS6Q6ZMG9 384 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 ZNF534Q76KX8 674 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 DET1Q7L5Y6 550 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 C11orf96Q7Z7L8 435 aa14.79□□□□□ -0.04
UPF1-202ENST00000594243 SLC9B2Q86UD5 537 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms