RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 DNAJC7Q99615 494 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 DEF6Q9H4E7 631 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 ZNF624Q9P2J8 865 aaPredicted RBP23.56■■□□□ 1.36
LSM4-202ENST00000593564 SLC30A1Q9Y6M5 507 aa23.56■■□□□ 1.36
LSM4-202ENST00000593564 VEGFDO43915 354 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 TPM3P06753 285 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 BPIP17213 487 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 TYRP1P17643 537 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 LRRC38Q5VT99 294 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 NPNTQ6UXI9 565 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 ZNF547Q8IVP9 402 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 OR8K1Q8NGG5 319 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 STARD8Q92502 1023 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 XPO4Q9C0E2 1151 aaKnown RBP23.55■■□□□ 1.36
LSM4-202ENST00000593564 POT1Q9NUX5 634 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 DNAJC16Q9Y2G8 782 aa23.55■■□□□ 1.36
LSM4-202ENST00000593564 NAV2Q8IVL1 2488 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 PDZK1P1A8MUH7 402 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 MTX2O75431 263 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 CDK14O94921 469 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 NDST3O95803 873 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 AMD1P17707 334 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 OAS2P29728 719 aaKnown RBP23.54■■□□□ 1.36
LSM4-202ENST00000593564 CCDC70Q6NSX1 233 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 ABRAXAS1Q6UWZ7 409 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 WASH2PQ6VEQ5 465 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 SPATA22Q8NHS9 363 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 TGM7Q96PF1 710 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 VPS35Q96QK1 796 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 ZNF768Q9H5H4 540 aaKnown RBP23.54■■□□□ 1.36
LSM4-202ENST00000593564 GLOD4Q9HC38 313 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 WASH6PQ9NQA3 447 aa23.54■■□□□ 1.36
LSM4-202ENST00000593564 FLNCQ14315 2725 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 CYSRT1A8MQ03 144 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 AKR1B10O60218 316 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 MT-CYBP00156 380 aaPredicted RBP23.53■■□□□ 1.36
LSM4-202ENST00000593564 KRT1P04264 644 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 BRAFP15056 766 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 FOXM1Q08050 763 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 SEPT7Q16181 437 aaKnown RBP23.53■■□□□ 1.36
LSM4-202ENST00000593564 KHDC1Q4VXA5 237 aaKnown RBP23.53■■□□□ 1.36
LSM4-202ENST00000593564 TEX44Q53QW1 395 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 AGAP9Q5VTM2 703 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 RFX6Q8HWS3 928 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 RBM12BQ8IXT5 1001 aaKnown RBP23.53■■□□□ 1.36
LSM4-202ENST00000593564 C9orf43Q8TAL5 461 aaPredicted RBP23.53■■□□□ 1.36
LSM4-202ENST00000593564 APOBEC4Q8WW27 367 aaKnown RBP23.53■■□□□ 1.36
LSM4-202ENST00000593564 ULBP3Q9BZM4 244 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 EPN3Q9H201 632 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 TMPRSS11EQ9UL52 423 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 SPO11Q9Y5K1 396 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 RPS6KL1Q9Y6S9 549 aa23.53■■□□□ 1.36
LSM4-202ENST00000593564 COL12A1Q99715 3063 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 A0A0A6YYK5 440 aaPredicted RBP23.52■■□□□ 1.36
LSM4-202ENST00000593564 AURKAO14965 403 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 TCN2P20062 427 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 IDSP22304 550 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 CAPZBP47756 277 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 LEPRP48357 1165 aaKnown RBP23.52■■□□□ 1.36
LSM4-202ENST00000593564 TRIM14Q14142 442 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 SKIDA1Q1XH10 827 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 DEFB109BQ30KR1 87 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 PRSS42Q7Z5A4 293 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 RHOT2Q8IXI1 618 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 TEKT5Q96M29 485 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 SLC40A1Q9NP59 571 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 ZNHIT6Q9NWK9 470 aaKnown RBP23.52■■□□□ 1.36
LSM4-202ENST00000593564 ANAPC2Q9UJX6 822 aa23.52■■□□□ 1.36
LSM4-202ENST00000593564 OR52A4PA6NMU1 304 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 PMPCBO75439 489 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 ZNF28P17035 718 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 PTPN3P26045 913 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 RPL10P27635 214 aaKnown RBP23.51■■□□□ 1.35
LSM4-202ENST00000593564 CASRP41180 1078 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 IL11RAQ14626 422 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 ATP13A5Q4VNC0 1218 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 ODF2Q5BJF6 829 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 C6orf15Q6UXA7 325 aaPredicted RBP23.51■■□□□ 1.35
LSM4-202ENST00000593564 B4GALNT4Q76KP1 1039 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 C11orf96Q7Z7L8 435 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 RSC1A1Q92681 617 aa23.51■■□□□ 1.35
LSM4-202ENST00000593564 RNF25Q96BH1 459 aaPredicted RBP23.51■■□□□ 1.35
LSM4-202ENST00000593564 VCLP18206 1134 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 F8A1P23610 371 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 HMGCLP35914 325 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 SEPHS1P49903 392 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 DYNLT1P63172 113 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 SH3BP2P78314 561 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 TMEM115Q12893 351 aaPredicted RBP23.5■■□□□ 1.35
LSM4-202ENST00000593564 GPR18Q14330 331 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 PRKD1Q15139 912 aaPredicted RBP23.5■■□□□ 1.35
LSM4-202ENST00000593564 C16orf46Q6P387 395 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 TRAPPC5Q8IUR0 188 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 BRSK1Q8TDC3 778 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 CXorf40BQ96DE9 158 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 OR6C1Q96RD1 312 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 TRABDQ9H4I3 376 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 BPIFA1Q9NP55 256 aa23.5■■□□□ 1.35
LSM4-202ENST00000593564 ZNF71Q9NQZ8 489 aaPredicted RBP23.5■■□□□ 1.35
LSM4-202ENST00000593564 DDX56Q9NY93 547 aaKnown RBP23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms