RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 BRAT1Q6PJG6 821 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 CRTC1Q6UUV9 634 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 SNX32Q86XE0 403 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 CPNE9Q8IYJ1 553 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 DEFB107AQ8IZN7 70 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 MYO1HQ8N1T3 1032 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 NXPE1Q8N323 547 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 CELF5Q8N6W0 485 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 SIDT2Q8NBJ9 832 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 OR56A4Q8NGH8 313 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 FBXO27Q8NI29 283 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 DTX3LQ8TDB6 740 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 HCAR2Q8TDS4 363 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 ZNF483Q8TF39 744 aaPredicted RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 FUBP1Q96AE4 644 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 EID2BQ96D98 161 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 C19orf60Q96EN9 201 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 RPL10LQ96L21 214 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 PPP1R36Q96LQ0 422 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 PLEKHG4BQ96PX9 1271 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 PANX3Q96QZ0 392 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 OSBPL1AQ9BXW6 950 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 ZDHHC6Q9H6R6 413 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 EFCAB1Q9HAE3 211 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 MID1IP1Q9NPA3 183 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 IL26Q9NPH9 171 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 MRPL40Q9NQ50 206 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 LATS2Q9NRM7 1088 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 ZDHHC3Q9NYG2 299 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 UTP6Q9NYH9 597 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 PKD2L2Q9NZM6 624 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 STX18Q9P2W9 335 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 SLC7A8Q9UHI5 535 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 ERVW-1Q9UQF0 538 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 FNDC3AQ9Y2H6 1198 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 FIS1Q9Y3D6 152 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 MRPS23Q9Y3D9 190 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 L3MBTL1Q9Y468 752 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 COPG1Q9Y678 874 aaKnown RBP11.15□□□□□ -0.62
LIG3-204ENST00000585740 PLXNB3Q9ULL4 1909 aa11.15□□□□□ -0.62
LIG3-204ENST00000585740 AGAP14A8MT82 685 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 TMEM233B4DJY2 109 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 CDC7O00311 574 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 RAD51BO15315 384 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 CDK14O94921 469 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 CBSLP0DN79 551 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 GM2AP17900 193 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 GNAZP19086 355 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 GKP32189 559 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 CBSP35520 551 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 NSG1P42857 185 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 PKNOX1P55347 436 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 AP2B1P63010 937 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 TBL3Q12788 808 aaKnown RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 ART3Q13508 389 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 ARHGEF7Q14155 803 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 CHRNA6Q15825 494 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 GEN1Q17RS7 908 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 SLC5A9Q2M3M2 681 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 KHDC1Q4VXA5 237 aaKnown RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 LY6G5CQ5SRR4 150 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 ASTLQ6HA08 431 aaPredicted RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 METTL2BQ6P1Q9 378 aaKnown RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 GDPD4Q6W3E5 623 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 DPY19L3Q6ZPD9 716 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 RIPOR1Q6ZS17 1223 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 FRA10AC1Q70Z53 315 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 GRASPQ7Z6J2 395 aaPredicted RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 MYLK4Q86YV6 388 aaPredicted RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.14□□□□□ -0.63
LIG3-204ENST00000585740 PGAM4Q8N0Y7 254 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 FBXW8Q8N3Y1 598 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 GIMAP7Q8NHV1 300 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 EEF1AKMT1Q8WVE0 214 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 PBXIP1Q96AQ6 731 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 FAM136AQ96C01 138 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 LRIG1Q96JA1 1093 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 NECAB3Q96P71 396 aaPredicted RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 HEPHQ9BQS7 1158 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 TACO1Q9BSH4 297 aaKnown RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 FAM126AQ9BYI3 521 aaPredicted RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 PIDD1Q9HB75 910 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 SARS2Q9NP81 518 aaKnown RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 SPATS2LQ9NUQ6 558 aaKnown RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 KCTD5Q9NXV2 234 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 CD274Q9NZQ7 290 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 CDH22Q9UJ99 828 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 FBXO10Q9UK96 956 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 G3BP2Q9UN86 482 aaKnown RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 C15orf41Q9Y2V0 281 aa11.14□□□□□ -0.63
LIG3-204ENST00000585740 MTF2Q9Y483 593 aaPredicted RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.14□□□□□ -0.63
LIG3-204ENST00000585740 ANKRD12Q6UB98 2062 aa11.13□□□□□ -0.63
LIG3-204ENST00000585740 TSPAN11A1L157 253 aa11.13□□□□□ -0.63
LIG3-204ENST00000585740 NPIPB15A6NHN6 443 aaPredicted RBP11.13□□□□□ -0.63
LIG3-204ENST00000585740 PSMD12O00232 456 aaPredicted RBP11.13□□□□□ -0.63
LIG3-204ENST00000585740 UBFD1O14562 309 aaKnown RBP11.13□□□□□ -0.63
LIG3-204ENST00000585740 CSPG5O95196 566 aa11.13□□□□□ -0.63
LIG3-204ENST00000585740 SIX3O95343 332 aaPredicted RBP11.13□□□□□ -0.63
LIG3-204ENST00000585740 PAPLNO95428 1278 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms