RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MSLNQ13421 630 aaPredicted RBP23.56■■□□□ 1.36
SHMT1-206ENST00000579558 OASLQ15646 514 aaKnown RBP23.56■■□□□ 1.36
SHMT1-206ENST00000579558 PHF19Q5T6S3 580 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 USP53Q70EK8 1073 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 RAB11FIP2Q7L804 512 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF761Q86XN6 746 aaPredicted RBP23.56■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF547Q8IVP9 402 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 SLITRK4Q8IW52 837 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 FBXO39Q8N4B4 442 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 TAB3Q8N5C8 712 aaPredicted RBP23.56■■□□□ 1.36
SHMT1-206ENST00000579558 TRIM58Q8NG06 486 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 C1orf54Q8WWF1 131 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 RTP4Q96DX8 246 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 SLC46A1Q96NT5 459 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 SLC38A3Q99624 504 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 NUDT22Q9BRQ3 303 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 PRDM8Q9NQV8 689 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 FKBPLQ9UIM3 349 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 DNAJC16Q9Y2G8 782 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 PPP2R2CQ9Y2T4 447 aa23.56■■□□□ 1.36
SHMT1-206ENST00000579558 IGHV1OR21-1A0A087WYE8 117 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 KIR2DS5A0A0G2JLQ3 304 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 A0A0G2JNG1 304 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 KIR2DS3K7RE56 304 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 PLD2O14939 933 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 PSMD3O43242 534 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 TNFSF15O95150 251 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 CD1CP29017 333 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 STIP1P31948 543 aaKnown RBP23.55■■□□□ 1.36
SHMT1-206ENST00000579558 CA5AP35218 305 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 PCBP4P57723 403 aaKnown RBP23.55■■□□□ 1.36
SHMT1-206ENST00000579558 KIR2DS5Q14953 304 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 CLPPQ16740 277 aaPredicted RBP23.55■■□□□ 1.36
SHMT1-206ENST00000579558 COL28A1Q2UY09 1125 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 CHCHD2P9Q5T1J5 151 aaPredicted RBP23.55■■□□□ 1.36
SHMT1-206ENST00000579558 GPRC6AQ5T6X5 926 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 SLC9B2Q86UD5 537 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 DDHD1Q8NEL9 900 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF398Q8TD17 642 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 SEMA6CQ9H3T2 930 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 SARS2Q9NP81 518 aaKnown RBP23.55■■□□□ 1.36
SHMT1-206ENST00000579558 SMOXQ9NWM0 555 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 LHX6Q9UPM6 363 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF148Q9UQR1 794 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 ADAMTS20P59510 1910 aa23.55■■□□□ 1.36
SHMT1-206ENST00000579558 OR5K4A6NMS3 321 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 AP2A1O95782 977 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 MLLT3P42568 568 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-206ENST00000579558 ABCG1P45844 678 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 PPM1FP49593 454 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF140P52738 457 aaPredicted RBP23.54■■□□□ 1.36
SHMT1-206ENST00000579558 CCDC173Q0VFZ6 552 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 NFATC2Q13469 925 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 SNX1Q13596 522 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 NKAIN2Q5VXU1 208 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 OR13C4Q8NGS5 318 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 ZMYND15Q9H091 742 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 LOXL2Q9Y4K0 774 aa23.54■■□□□ 1.36
SHMT1-206ENST00000579558 DSPP15924 2871 aaKnown RBP23.54■■□□□ 1.36
SHMT1-206ENST00000579558 CELSR3Q9NYQ7 3312 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 GOLGA6L3A6NEY3 463 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 PDZK1P1A8MUH7 402 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 AGRPO00253 132 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 SRP72O76094 671 aaKnown RBP23.53■■□□□ 1.36
SHMT1-206ENST00000579558 IFNB1P01574 187 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 HGFP14210 728 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 VCLP18206 1134 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 AKT1P31749 480 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 GPLD1P80108 840 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 TMPRSS15P98073 1019 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 SEPT7Q16181 437 aaKnown RBP23.53■■□□□ 1.36
SHMT1-206ENST00000579558 C11orf96Q7Z7L8 435 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 RASGEF1AQ8N9B8 481 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 AVL9Q8NBF6 648 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF248Q8NDW4 579 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 SH3KBP1Q96B97 665 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 AHCYL2Q96HN2 611 aaKnown RBP23.53■■□□□ 1.36
SHMT1-206ENST00000579558 ASB8Q9H765 288 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 CPNE7Q9UBL6 633 aa23.53■■□□□ 1.36
SHMT1-206ENST00000579558 CDRT15L2A8MXV6 281 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 ITGA2BP08514 1039 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 JMJD7P0C870 316 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 TPH1P17752 444 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 MSH3P20585 1137 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 ITPKBP27987 946 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 HADHAP40939 763 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 ZNF574Q6ZN55 896 aaPredicted RBP23.52■■□□□ 1.36
SHMT1-206ENST00000579558 OR10G6Q8NH81 332 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 TMEM159Q96B96 161 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 NAF1Q96HR8 494 aaKnown RBP23.52■■□□□ 1.36
SHMT1-206ENST00000579558 TLR10Q9BXR5 811 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 PISDQ9UG56 409 aa23.52■■□□□ 1.36
SHMT1-206ENST00000579558 PRR19A6NJB7 356 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 LDB2O43679 373 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 IDSP22304 550 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 CSF2RBP32927 897 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 FDFT1P37268 417 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 CTSCP53634 463 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 XIAPP98170 497 aa23.51■■□□□ 1.35
SHMT1-206ENST00000579558 SQSTM1Q13501 440 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms