RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CAB39LQ9H9S4 337 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 BPIFA1Q9NP55 256 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 SPATS2LQ9NUQ6 558 aaKnown RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 MARCH4Q9P2E8 410 aaPredicted RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 SLC17A6Q9P2U8 582 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 B4GALT6Q9UBX8 382 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 EMCNQ9ULC0 261 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 RAP2CQ9Y3L5 183 aa7.9□□□□□ -1.14
VPS39-213ENST00000570062 TNPO3Q9Y5L0 923 aaKnown RBP7.9□□□□□ -1.14
VPS39-213ENST00000570062 IGLV3-16A0A075B6K0 115 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 ERICH4A6NGS2 130 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 TRPC5OSA6NMA1 111 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 TARM1B6A8C7 271 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 PRRT4C9JH25 899 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 G3V2L1 256 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 STX16-NPEPL1H3BU86 382 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 STX16O14662 325 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 BUD23O43709 281 aaKnown RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 KERAO60938 352 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 DNAJC6O75061 913 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 WISP3O95389 354 aaPredicted RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 HSPA4LO95757 839 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 SLC4A1P02730 911 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 FTH1P02794 183 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 S100BP04271 92 aaPredicted RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 PRKCGP05129 697 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 ELFN1P0C7U0 828 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 FGF3P11487 239 aaPredicted RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 CD1DP15813 335 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 PCSK2P16519 638 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 IMPDH1P20839 514 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 C5AR1P21730 350 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 CDKN2DP55273 166 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 MRPS21P82921 87 aaKnown RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 DPTQ07507 201 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 GRSF1Q12849 480 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS39-213ENST00000570062 CDC16Q13042 620 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 IFT88Q13099 833 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 SMAD4Q13485 552 aaKnown RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 HTR4Q13639 388 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 RCN2Q14257 317 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 PCLAFQ15004 111 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 CHRNA6Q15825 494 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 GAB4Q2WGN9 574 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 TMEM52BQ4KMG9 183 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 LACTB2Q53H82 288 aaPredicted RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 TECRLQ5HYJ1 363 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 RBM20Q5T481 1227 aaKnown RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 PARM1Q6UWI2 310 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 FAM151BQ6UXP7 276 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 EP400NLQ6ZTU2 488 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 FAM47EQ6ZV65 393 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 ERN2Q76MJ5 926 aaKnown RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 EFL1Q7Z2Z2 1120 aaKnown RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 ISCA2Q86U28 154 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 CHPFQ8IZ52 775 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 CENPLQ8N0S6 344 aaPredicted RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 MYO1HQ8N1T3 1032 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 PLD6Q8N2A8 252 aaKnown RBP7.89□□□□□ -1.15
VPS39-213ENST00000570062 CHST14Q8NCH0 376 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 ZFYVE19Q96K21 471 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 CNTNAP3BQ96NU0 1288 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 BIRC8Q96P09 236 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 GPR78Q96P69 363 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 NDNQ99608 321 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 OLFM1Q99784 485 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 CCT7Q99832 543 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 APOL5Q9BWW9 433 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 C1QTNF7Q9BXJ2 289 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 TRIM54Q9BYV2 358 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 CNTNAP3Q9BZ76 1288 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 POMKQ9H5K3 350 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 PCDH12Q9NPG4 1184 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 ZDHHC4Q9NPG8 344 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 SAR1AQ9NR31 198 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 IGSF5Q9NSI5 407 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 XPR1Q9UBH6 696 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 HAO1Q9UJM8 370 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 TRIM33Q9UPN9 1127 aa7.89□□□□□ -1.15
VPS39-213ENST00000570062 OR51F1A6NGY5 319 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 FIGNL2A6NMB9 653 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 GPR89AB7ZAQ6 455 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 ARNTLO00327 626 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 MAN2B1O00754 1011 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 NEMP1O14524 444 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 GIPC1O14908 333 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 SLC16A5O15375 505 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 SNX2O60749 519 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 TBX10O75333 385 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 MLYCDO95822 493 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 EPHX1P07099 455 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 ENO2P09104 434 aaPredicted RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 GPR89BP0CG08 455 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 ATP1B2P14415 290 aaPredicted RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 TFEBP19484 476 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 MSH3P20585 1137 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 IGFBP4P22692 258 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 TEAD1P28347 426 aa7.88□□□□□ -1.15
VPS39-213ENST00000570062 ADSLP30566 484 aaPredicted RBP7.88□□□□□ -1.15
VPS39-213ENST00000570062 NTSR1P30989 418 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms