RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 UBXN4Q92575 508 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 SGSM3Q96HU1 749 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 ZNF514Q96K75 400 aaPredicted RBP15.9■□□□□ 0.14
CLK3-223ENST00000568488 MGME1Q9BQP7 344 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 CARD9Q9H257 536 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 C5AR2Q9P296 337 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 ATXN10Q9UBB4 475 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 DNAJC16Q9Y2G8 782 aa15.9■□□□□ 0.14
CLK3-223ENST00000568488 DIDO1Q9BTC0 2240 aaKnown RBP15.89■□□□□ 0.13
CLK3-223ENST00000568488 A0A0J9YYE9 177 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 FADS2P1A8MWK0 482 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 MTA2O94776 668 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 TRBC1P01850 177 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 ZNF8P17098 575 aaPredicted RBP15.89■□□□□ 0.13
CLK3-223ENST00000568488 CLCNKAP51800 687 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 GPR18Q14330 331 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 ERMARDQ5T6L9 678 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 VWA5B1Q5TIE3 1220 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 CRTC3Q6UUV7 619 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.89■□□□□ 0.13
CLK3-223ENST00000568488 ZBTB2Q8N680 514 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 ST6GALNAC3Q8NDV1 305 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 UBE2Q2Q8WVN8 375 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 CXorf40BQ96DE9 158 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 SLC41A2Q96JW4 573 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 TUBGCP2Q9BSJ2 902 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 OR2AG1Q9H205 316 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 AGPAT4Q9NRZ5 378 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 FAM207AQ9NSI2 230 aaPredicted RBP15.89■□□□□ 0.13
CLK3-223ENST00000568488 SEPT11Q9NVA2 429 aaKnown RBP15.89■□□□□ 0.13
CLK3-223ENST00000568488 TRIM10Q9UDY6 481 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 EPHA6Q9UF33 1036 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 TCFL5Q9UL49 500 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 NTNG1Q9Y2I2 539 aa15.89■□□□□ 0.13
CLK3-223ENST00000568488 HIVEP1P15822 2718 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 HEATR9A2RTY3 570 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 OR52A4PA6NMU1 304 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 PEX11BO96011 259 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 RPL10P27635 214 aaKnown RBP15.88■□□□□ 0.13
CLK3-223ENST00000568488 MMP13P45452 471 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 CLEC16AQ2KHT3 1053 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 KRTAP21-3Q3LHN1 58 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 RALGPS1Q5JS13 557 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 MIIPQ5JXC2 388 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 MARC1Q5VT66 337 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 LCN10Q6JVE6 187 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 PHF13Q86YI8 300 aaPredicted RBP15.88■□□□□ 0.13
CLK3-223ENST00000568488 SLC38A9Q8NBW4 561 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 WDR24Q96S15 920 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 MAP3K3Q99759 626 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 SNRNP25Q9BV90 132 aaKnown RBP15.88■□□□□ 0.13
CLK3-223ENST00000568488 FAM83DQ9H4H8 585 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 SLC40A1Q9NP59 571 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 NT5MQ9NPB1 228 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 KCND1Q9NSA2 647 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 POT1Q9NUX5 634 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 TMEM63CQ9P1W3 806 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 SLC23A2Q9UGH3 650 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 NF1P21359 2839 aa15.88■□□□□ 0.13
CLK3-223ENST00000568488 EIF3CLB5ME19 914 aaKnown RBP15.87■□□□□ 0.13
CLK3-223ENST00000568488 FZD6O60353 706 aa15.87■□□□□ 0.13
CLK3-223ENST00000568488 RAB40ALP0C0E4 278 aa15.87■□□□□ 0.13
CLK3-223ENST00000568488 OGDHQ02218 1023 aa15.87■□□□□ 0.13
CLK3-223ENST00000568488 ATP1A4Q13733 1029 aa15.87■□□□□ 0.13
CLK3-223ENST00000568488 GPR19Q15760 415 aa15.87■□□□□ 0.13
CLK3-223ENST00000568488 LURAP1Q96LR2 239 aa15.87■□□□□ 0.13
CLK3-223ENST00000568488 EIF3CQ99613 913 aaKnown RBP15.87■□□□□ 0.13
CLK3-223ENST00000568488 NLNQ9BYT8 704 aa15.87■□□□□ 0.13
CLK3-223ENST00000568488 RAB33BQ9H082 229 aa15.87■□□□□ 0.13
CLK3-223ENST00000568488 TCRBV5S1A1TA0A578 114 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 MEN1O00255 615 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 SLC25A14O95258 325 aaPredicted RBP15.86■□□□□ 0.13
CLK3-223ENST00000568488 JCHAINP01591 159 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 ALPPP05187 535 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 PSMA2P25787 234 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 ITGA3P26006 1051 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 SOX5P35711 763 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 SPINT3P49223 89 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 DRG2P55039 364 aaKnown RBP15.86■□□□□ 0.13
CLK3-223ENST00000568488 GSDMDP57764 484 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 LLGL1Q15334 1064 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 SYCP1Q15431 976 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 CRB2Q5IJ48 1285 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 HENMT1Q5T8I9 393 aaKnown RBP15.86■□□□□ 0.13
CLK3-223ENST00000568488 ZNF517Q6ZMY9 492 aaPredicted RBP15.86■□□□□ 0.13
CLK3-223ENST00000568488 GDF7Q7Z4P5 450 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 RBM12BQ8IXT5 1001 aaKnown RBP15.86■□□□□ 0.13
CLK3-223ENST00000568488 ZADH2Q8N4Q0 377 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 INPP5DQ92835 1189 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 PCMTD1Q96MG8 357 aaPredicted RBP15.86■□□□□ 0.13
CLK3-223ENST00000568488 PEBP4Q96S96 227 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 NLRC4Q9NPP4 1024 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 CWC15Q9P013 229 aaKnown RBP15.86■□□□□ 0.13
CLK3-223ENST00000568488 SEMA5BQ9P283 1151 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 COPG2Q9UBF2 871 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 DNPEPQ9ULA0 475 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 CHKBQ9Y259 395 aa15.86■□□□□ 0.13
CLK3-223ENST00000568488 C1orf232A0A0U1RR37 186 aa15.85■□□□□ 0.13
CLK3-223ENST00000568488 UBA6A0AVT1 1052 aaPredicted RBP15.85■□□□□ 0.13
CLK3-223ENST00000568488 MAFKO60675 156 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms