RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TRPC5OSA6NMA1 111 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 NR5A2O00482 541 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 TPST1O60507 370 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 OAS1P00973 400 aaKnown RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 DNAJB1P25685 340 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 MSS51Q4VC12 460 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 ATP6AP1LQ52LC2 224 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 PAGE2BQ5JRK9 111 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 NADSYN1Q6IA69 706 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 LPCAT2Q7L5N7 544 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 EFL1Q7Z2Z2 1120 aaKnown RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 JPH3Q8WXH2 748 aaPredicted RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 GLMNQ92990 594 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 RAD51AP1Q96B01 352 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 TOE1Q96GM8 510 aaKnown RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 LENG8Q96PV6 779 aaPredicted RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 NLNQ9BYT8 704 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 CCDC167Q9P0B6 97 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 ARL2BPQ9Y2Y0 163 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 B2RBV5 119 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 H3BQF6 201 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 TK2O00142 265 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 GRID2O43424 1007 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 GJB3O75712 270 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 SERPINE1P05121 402 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 CHRM1P11229 460 aaPredicted RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 ATP5F1P24539 256 aaPredicted RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 PTGER3P43115 390 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 ABCE1P61221 599 aaKnown RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 PRKCQQ04759 706 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 DLX2Q07687 328 aaPredicted RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 DPYSQ14117 519 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 PTPRRQ15256 657 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 CCDC153Q494R4 210 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 C11orf74Q86VG3 221 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 ZNF761Q86XN6 746 aaPredicted RBP9.15□□□□□ -0.94
VPS39-205ENST00000562258 TMEM145Q8NBT3 493 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 OR4E2Q8NGC2 313 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 ZCCHC10Q8TBK6 192 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 HEXDCQ8WVB3 486 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 OTULINQ96BN8 352 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 MARK4Q96L34 752 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 ECSITQ9BQ95 431 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 DPY30Q9C005 99 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 CLEC4EQ9ULY5 219 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 CA5BQ9Y2D0 317 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 USH1CQ9Y6N9 552 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 COLEC10Q9Y6Z7 277 aa9.15□□□□□ -0.94
VPS39-205ENST00000562258 TMEM265A0A087WTH1 108 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 SASH3O75995 380 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 LRATO95237 230 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 ADH1BP00325 375 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 HOXD9P28356 352 aaPredicted RBP9.15□□□□□ -0.95
VPS39-205ENST00000562258 IL12RB1P42701 662 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 SCAPQ12770 1279 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 INPP5AQ14642 412 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 HNRNPA1L2Q32P51 320 aaKnown RBP9.15□□□□□ -0.95
VPS39-205ENST00000562258 DRICH1Q6PGQ1 229 aaPredicted RBP9.15□□□□□ -0.95
VPS39-205ENST00000562258 NCEH1Q6PIU2 408 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 PIM3Q86V86 326 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 LRRTM4Q86VH4 590 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 TFGQ92734 400 aaPredicted RBP9.15□□□□□ -0.95
VPS39-205ENST00000562258 CEP295NLQ96MC4 621 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 EFHD1Q9BUP0 239 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 SLC17A7Q9P2U7 560 aa9.15□□□□□ -0.95
VPS39-205ENST00000562258 TNPO3Q9Y5L0 923 aaKnown RBP9.15□□□□□ -0.95
VPS39-205ENST00000562258 A0A087X1B8 175 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 RGRP47804 291 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 RPS21P63220 83 aaKnown RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 TMEM115Q12893 351 aaPredicted RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 CAPN13Q6MZZ7 669 aaPredicted RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 KRT78Q8N1N4 520 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 RNF148Q8N7C7 305 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 WFDC5Q8TCV5 224 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 CLP1Q92989 425 aaKnown RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 GRAMD1AQ96CP6 724 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 AARSD1Q9BTE6 412 aaKnown RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 THTPAQ9BU02 230 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 ZSCAN5AQ9BUG6 496 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 TTLL2Q9BWV7 592 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 SLC17A9Q9BYT1 436 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 ASPSCR1Q9BZE9 553 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 USP29Q9HBJ7 922 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 SLCO1B3Q9NPD5 702 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 GRHL1Q9NZI5 618 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 DNAJC13O75165 2243 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 ZNF839A8K0R7 811 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 VGLL3A8MV65 326 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 TMEM114B3SHH9 223 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 OR1I1O60431 355 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 STK16O75716 305 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 ESR1P03372 595 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 C6P13671 934 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 JUNDP17535 347 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 MRPL58Q14197 206 aaKnown RBP9.14□□□□□ -0.95
VPS39-205ENST00000562258 GRAMD1BQ3KR37 738 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 LDLRAP1Q5SW96 308 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 CYP20A1Q6UW02 462 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 LMNTD2Q8IXW0 634 aa9.14□□□□□ -0.95
VPS39-205ENST00000562258 POU5F2Q8N7G0 328 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms