RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 ATOH1Q92858 354 aaPredicted RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 ST6GALNAC6Q969X2 333 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 FKBP10Q96AY3 582 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 TMEM186Q96B77 213 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 FBXL8Q96CD0 374 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 RSPRY1Q96DX4 576 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 DTNBP1Q96EV8 351 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 PRR11Q96HE9 360 aaPredicted RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 DHTKD1Q96HY7 919 aaPredicted RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 AJUBAQ96IF1 538 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 KIRREL1Q96J84 757 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 COQ10AQ96MF6 247 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 GPR78Q96P69 363 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 DDOQ99489 341 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 ZSWIM1Q9BR11 485 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 MXRA8Q9BRK3 442 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 FNDC11Q9BVV2 318 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 TBC1D10AQ9BXI6 508 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 IDI2Q9BXS1 227 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 RNF26Q9BY78 433 aaPredicted RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 PANK2Q9BZ23 570 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 PKIBQ9C010 78 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 LRRCC1Q9C099 1032 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 GPR88Q9GZN0 384 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 POLR1EQ9GZS1 481 aaKnown RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 IQCGQ9H095 443 aaKnown RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 TMEM117Q9H0C3 514 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 TMEM231Q9H6L2 316 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 VAT1LQ9HCJ6 419 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 RPRD1BQ9NQG5 326 aaKnown RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 HOMER3Q9NSC5 361 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 ABHD10Q9NUJ1 306 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 TCP11L1Q9NUJ3 509 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 MTPAPQ9NVV4 582 aaKnown RBP eCLIP2.03□□□□□ -2.08
RTF1-207ENST00000561076 ASNSD1Q9NWL6 643 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 RAB20Q9NX57 234 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 HOXC10Q9NYD6 342 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 WSB2Q9NYS7 404 aaPredicted RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 GTSE1Q9NYZ3 720 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 NDUFA13Q9P0J0 144 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 ABI3Q9P2A4 366 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 KLHL8Q9P2G9 620 aaPredicted RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 HDAC6Q9UBN7 1215 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 DNAJB4Q9UDY4 337 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 UBQLN2Q9UHD9 624 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 FAM153AQ9UHL3 310 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 TLK1Q9UKI8 766 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 ICKQ9UPZ9 632 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 B3GNT3Q9Y2A9 372 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 NAALAD2Q9Y3Q0 740 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 PKP3Q9Y446 797 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 LSM4Q9Y4Z0 139 aaKnown RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 CLDN16Q9Y5I7 305 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.03□□□□□ -2.08
RTF1-207ENST00000561076 SQORQ9Y6N5 450 aa2.03□□□□□ -2.08
RTF1-207ENST00000561076 A0A0A6YYC8 382 aaPredicted RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 A0A1W2PS29 197 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 KANSL1LA0AUZ9 987 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 DPPA5A6NC42 116 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 MAGEA13PA6NCF6 341 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 NCF1BA6NI72 391 aaPredicted RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 CGB1A6NKQ9 187 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 A8MUI8 341 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 NCF1CA8MVU1 366 aaPredicted RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 KPNA7A9QM74 516 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 DIRC3C9JPN6 131 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 NPIPB11E5RHQ5 1161 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 H0YIV9 168 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 H3BMM5 538 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 GOLGA8SH3BPF8 625 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 I3L1I5 382 aaPredicted RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 M0QX08 132 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 HRKO00198 91 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 HS3ST1O14792 307 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 SPRY1O43609 319 aaPredicted RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 FLOT1O75955 427 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 UGT2B4P06133 528 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 PGK2P07205 417 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 NPSP0C0P6 89 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 CCDC172P0C7W6 258 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 PLA2G4BP0C869 781 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 ETFAP13804 333 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 AKR1A1P14550 325 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 RPA2P15927 270 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 HOXB4P17483 251 aaPredicted RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 CEBPBP17676 345 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 GALP22466 123 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 FBLN1P23142 703 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 DNAJB1P25685 340 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 LONP1P36776 959 aaKnown RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 NSFP46459 744 aaKnown RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 GPR12P47775 334 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 SLC9A3P48764 834 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 FMO5P49326 533 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 NUMBP49757 651 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 ASCL1P50553 236 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 CLCNKBP51801 687 aa2.02□□□□□ -2.09
RTF1-207ENST00000561076 HNRNPFP52597 415 aaKnown RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 COPB1P53618 953 aaKnown RBP2.02□□□□□ -2.09
RTF1-207ENST00000561076 PRRX1P54821 245 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms