RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 KRT31Q15323 416 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 PLA2G4EQ3MJ16 856 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 ANKRD20A8PQ5CZ79 823 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 ZRANB3Q5FWF4 1079 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 HENMT1Q5T8I9 393 aaKnown RBP17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 C1QL3Q5VWW1 255 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 SLC6A19Q695T7 634 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 CRTC3Q6UUV7 619 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 SLC34A3Q8N130 599 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 ARFGAP1Q8N6T3 406 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 Q8NA96 180 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 LPCAT1Q8NF37 534 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 WASH6PQ9NQA3 447 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 ZNF624Q9P2J8 865 aaPredicted RBP17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 EPHA6Q9UF33 1036 aa17.52■□□□□ 0.4
TSPAN3-208ENST00000560514 LRBAP50851 2863 aa17.52■□□□□ 0.39
TSPAN3-208ENST00000560514 RGSL1A5PLK6 1076 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 A6NL46 340 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 TMCO5BA8MYB1 307 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 GPR89AB7ZAQ6 455 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 ZNF185O15231 689 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 CPNE3O75131 537 aaKnown RBP17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 TMEM63AO94886 807 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 KLK3P07288 261 aaPredicted RBP17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 GPR89BP0CG08 455 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 ATP1A3P13637 1013 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 LPOP22079 712 aaPredicted RBP17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 CES1P23141 567 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 ZNF569Q5MCW4 686 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 IQCKQ8N0W5 287 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 ANKRD20A12PQ8NF67 263 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 FDCSPQ8NFU4 85 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 GBP4Q96PP9 640 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 SPATA16Q9BXB7 569 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 AKIRIN1Q9H9L7 192 aaPredicted RBP17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 TRIM39Q9HCM9 518 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 ARFGAP3Q9NP61 516 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 ETNK2Q9NVF9 386 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 ANO10Q9NW15 660 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 GPR83Q9NYM4 423 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 SNX7Q9UNH6 387 aa17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 ANKRD17O75179 2603 aaKnown RBP17.51■□□□□ 0.39
TSPAN3-208ENST00000560514 SSU72P8A0A1W2PR75 194 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 KMOO15229 486 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 ATMINO43313 823 aaPredicted RBP17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 KRT86O43790 486 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 CEACAM4O75871 244 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 FOLR1P15328 257 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 RPL10P27635 214 aaKnown RBP17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 RPL26P61254 145 aaKnown RBP17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 GPR18Q14330 331 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 KCNAB1Q14722 419 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 SMTNL2Q2TAL5 461 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 PLEKHA7Q6IQ23 1121 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 KLHL35Q6PF15 583 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 LRRTM4Q86VH4 590 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 TMEM126BQ8IUX1 230 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 LRRC49Q8IUZ0 686 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 HSPH1Q92598 858 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 ZNF514Q96K75 400 aaPredicted RBP17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 WDR24Q96S15 920 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 TDRD1Q9BXT4 1180 aaKnown RBP17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 RAB33BQ9H082 229 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 PCDH9Q9HC56 1237 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 SLC40A1Q9NP59 571 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 FGF21Q9NSA1 209 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 FANCLQ9NW38 375 aa17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 RPL26L1Q9UNX3 145 aaKnown RBP17.5■□□□□ 0.39
TSPAN3-208ENST00000560514 ANKUB1A6NFN9 424 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 TMEM191CA6NGB0 347 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 SCRG1O75711 98 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 EBLN1P0CF75 366 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 ZNF7P17097 686 aaPredicted RBP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 VCLP18206 1134 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 IDSP22304 550 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 HALP42357 657 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 RRADP55042 308 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 DSC2Q02487 901 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 DPYSL2Q16555 572 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 ZNF648Q5T619 568 aaPredicted RBP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 SASS6Q6UVJ0 657 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 CYP4V2Q6ZWL3 525 aaPredicted RBP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 MED25Q71SY5 747 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 POLNQ7Z5Q5 900 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 TEX26Q8N6G2 289 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 RBMXL3Q8N7X1 1067 aaKnown RBP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 TMEM102Q8N9M5 508 aaPredicted RBP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 SNRNP40Q96DI7 357 aaKnown RBP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 C19orf60Q96EN9 201 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 SLC41A2Q96JW4 573 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 CSPG4P5Q96PW8 444 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 LYSMD1Q96S90 227 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 MLPHQ9BV36 600 aaPredicted RBP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 NUDT9Q9BW91 350 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 LIMA1Q9UHB6 759 aaKnown RBP17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 ADGRG1Q9Y653 693 aa17.49■□□□□ 0.39
TSPAN3-208ENST00000560514 IGHV5-51A0A0C4DH38 117 aa17.48■□□□□ 0.39
TSPAN3-208ENST00000560514 UBA6A0AVT1 1052 aaPredicted RBP17.48■□□□□ 0.39
TSPAN3-208ENST00000560514 OR52A4PA6NMU1 304 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms