RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	PECAM1	P16284	738 aa	Predicted RBP	13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	BPI	P17213	487 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	CTNNA1	P35221	906 aa	Known RBP	13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	PTPN7	P35236	360 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	RWDD2B	P57060	319 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	WASHC5	Q12768	1159 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	NFATC2	Q13469	925 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	AGAP9	Q5VTM2	703 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	WASH2P	Q6VEQ5	465 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	ADGRG6	Q86SQ4	1221 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	TRAPPC5	Q8IUR0	188 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	SYCE1	Q8N0S2	351 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	IL22RA1	Q8N6P7	574 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	TTC13	Q8NBP0	860 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	RCBTB1	Q8NDN9	531 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	MED8	Q96G25	268 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	C19orf43	Q9BQ61	176 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	GBA3	Q9H227	469 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	WASH6P	Q9NQA3	447 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	PRKAB1	Q9Y478	270 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	PLEKHM1	Q9Y4G2	1056 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	ST14	Q9Y5Y6	855 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	COL6A6	A6NMZ7	2263 aa		13.89	□□□□□ -0.19
TPM1-223	ENST00000560445	GLYATL1P3	A0A0U1RQE8	302 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	C9orf172	C9J069	976 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	CASC3	O15234	703 aa	Known RBP	13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	ANKRD34C	P0C6C1	535 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	XRCC1	P18887	633 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	CSF2RB	P32927	897 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	MAPK9	P45984	424 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	ZNF75D	P51815	510 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	NOMO1	Q15155	1222 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	SLC1A5	Q15758	541 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	LONRF2	Q1L5Z9	754 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	SIRPB2	Q5JXA9	342 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	NKAIN2	Q5VXU1	208 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	CRTC3	Q6UUV7	619 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	KDELC1	Q6UW63	502 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	ZNF574	Q6ZN55	896 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	TMPRSS9	Q7Z410	1059 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	ZNF605	Q86T29	641 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	KIAA1328	Q86T90	577 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	DTX1	Q86Y01	620 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	ZNF567	Q8N184	647 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	UBL4B	Q8N7F7	174 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	BEND7	Q8N7W2	519 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	IPMK	Q8NFU5	416 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	BLOC1S5	Q8TDH9	187 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	HEXDC	Q8WVB3	486 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	NCSTN	Q92542	709 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	TTC9	Q92623	222 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	ART4	Q93070	314 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	CXorf40B	Q96DE9	158 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	SMOX	Q9NWM0	555 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	UBP1	Q9NZI7	540 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	FOXJ2	Q9P0K8	574 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	SAE1	Q9UBE0	346 aa	Predicted RBP	13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	PCDHA3	Q9Y5H8	950 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	ADGRG1	Q9Y653	693 aa		13.88	□□□□□ -0.19
TPM1-223	ENST00000560445	TRBV23OR9-2	A0A075B6M9	112 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	C5orf60	A6NFR6	353 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	EFCAB7	A8K855	629 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	MIF4GD	A9UHW6	222 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	STX7	O15400	261 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	PJA2	O43164	708 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	EFS	O43281	561 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	CRTAM	O95727	393 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	RALB	P11234	206 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	FGF3	P11487	239 aa	Predicted RBP	13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	CCL4	P13236	92 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	AMD1	P17707	334 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	ETV5	P41161	510 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	UBE2I	P63279	158 aa	Known RBP	13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	ABRAXAS1	Q6UWZ7	409 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	TMEM26	Q6ZUK4	368 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	AMZ2	Q86W34	360 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	ZFAND4	Q86XD8	727 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	DDHD1	Q8NEL9	900 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	EID2B	Q96D98	161 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	ZDHHC12	Q96GR4	267 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	OSBPL8	Q9BZF1	889 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	FBXO8	Q9NRD0	319 aa		13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	MN1	Q10571	1320 aa	Predicted RBP	13.87	□□□□□ -0.19
TPM1-223	ENST00000560445	KALRN	O60229	2985 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	UBXN7	O94888	489 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	MSH3	P20585	1137 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	FECH	P22830	423 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	MAP4	P27816	1152 aa	Known RBP	13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	AKT1	P31749	480 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	CD68	P34810	354 aa	Predicted RBP	13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	VAV2	P52735	878 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	MC2R	Q01718	297 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	MC1R	Q01726	317 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	DMPK	Q09013	629 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	KIF5A	Q12840	1032 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	TMEM115	Q12893	351 aa	Predicted RBP	13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	ATP13A5	Q4VNC0	1218 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	SNAP47	Q5SQN1	464 aa		13.86	□□□□□ -0.19
TPM1-223	ENST00000560445	DARS2	Q6PI48	645 aa	Known RBP	13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms