RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 PAG1Q9NWQ8 432 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 B3GALT5Q9Y2C3 310 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 CMAHPQ9Y471 501 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 TCF20Q9UGU0 1960 aaKnown RBP4.39□□□□□ -1.71
SCFD1-221ENST00000556534 RUSC2Q8N2Y8 1516 aa4.39□□□□□ -1.71
SCFD1-221ENST00000556534 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 C5orf60A6NFR6 353 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 CAPN9O14815 690 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 CLTBP09497 229 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 SELLP14151 372 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 HRH2P25021 359 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 PSMB10P40306 273 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 FMO5P49326 533 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 DRG2P55039 364 aaKnown RBP4.38□□□□□ -1.71
SCFD1-221ENST00000556534 IRF3Q14653 427 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 RBBP5Q15291 538 aaKnown RBP4.38□□□□□ -1.71
SCFD1-221ENST00000556534 KRTAP24-1Q3LI83 254 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 ACCSLQ4AC99 568 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 SIRPB2Q5JXA9 342 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 HYIQ5T013 277 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 STPG1Q5TH74 334 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 GDPD4Q6W3E5 623 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 Q6ZTC4 211 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 KCTD8Q6ZWB6 473 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 USP43Q70EL4 1123 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 NFE4Q86UQ8 179 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 TEX11Q8IYF3 940 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 GCSAMQ8N6F7 178 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 EMC1Q8N766 993 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 LMNTD1Q8N9Z9 388 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 OR13A1Q8NGR1 328 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 PHF21AQ96BD5 680 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 LINGO1Q96FE5 620 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 ZNF583Q96ND8 569 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 BARD1Q99728 777 aaKnown RBP4.38□□□□□ -1.71
SCFD1-221ENST00000556534 LRRC1Q9BTT6 524 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 POLR3CQ9BUI4 534 aaPredicted RBP4.38□□□□□ -1.71
SCFD1-221ENST00000556534 UBA5Q9GZZ9 404 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 FKRPQ9H9S5 495 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 TAAR2Q9P1P5 351 aa4.38□□□□□ -1.71
SCFD1-221ENST00000556534 FSD2A1L4K1 749 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 PTGES3LE9PB15 166 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 P2RY10O00398 339 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 AP3D1O14617 1153 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 VILLO15195 856 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 LMX1BO60663 402 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 ZNF217O75362 1048 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 CRYAAP02489 173 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 GM2AP17900 193 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 AHRP35869 848 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 AMPHP49418 695 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 RPL24P83731 157 aaKnown RBP4.37□□□□□ -1.71
SCFD1-221ENST00000556534 MAPRE1Q15691 268 aaKnown RBP4.37□□□□□ -1.71
SCFD1-221ENST00000556534 ZNF852Q6ZMS4 543 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 DCUN1D3Q8IWE4 304 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 RBM15BQ8NDT2 890 aaKnown RBP4.37□□□□□ -1.71
SCFD1-221ENST00000556534 SLC24A4Q8NFF2 622 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 HES6Q96HZ4 224 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 SEMA3CQ99985 751 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 LRMDAQ9H2I8 198 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 TBC1D22BQ9NU19 505 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 TRMT1Q9NXH9 659 aaKnown RBP4.37□□□□□ -1.71
SCFD1-221ENST00000556534 MARCH4Q9P2E8 410 aaPredicted RBP4.37□□□□□ -1.71
SCFD1-221ENST00000556534 POLG2Q9UHN1 485 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 ZNF112Q9UJU3 913 aa4.37□□□□□ -1.71
SCFD1-221ENST00000556534 WDR81Q562E7 1941 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 A0A0B4J293 547 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 FAM172BPA6NC97 362 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 GPC4O75487 556 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 IGHV4-39P01824 125 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 MT3P25713 68 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 ARCN1P48444 511 aaKnown RBP4.36□□□□□ -1.71
SCFD1-221ENST00000556534 CTSCP53634 463 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 AIMP2Q13155 320 aaKnown RBP4.36□□□□□ -1.71
SCFD1-221ENST00000556534 RALBP1Q15311 655 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 DUSP28Q4G0W2 176 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 FAM205BPQ63HN1 556 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 C19orf48Q6RUI8 117 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 TPRG1Q6ZUI0 275 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 PLEKHM3Q6ZWE6 761 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 MARK2Q7KZI7 788 aaKnown RBP4.36□□□□□ -1.71
SCFD1-221ENST00000556534 SZRD1Q7Z422 152 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 ZNF329Q86UD4 541 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 GALNT13Q8IUC8 556 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 CEP97Q8IW35 865 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 SLC5A8Q8N695 610 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 GSDMBQ8TAX9 411 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 FAM120BQ96EK7 910 aaKnown RBP4.36□□□□□ -1.71
SCFD1-221ENST00000556534 ALG14Q96F25 216 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 UHRF2Q96PU4 802 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 NUDCD1Q96RS6 583 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 C1QTNF1Q9BXJ1 281 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 SYNCQ9H7C4 482 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 TCP11L1Q9NUJ3 509 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 RCC2Q9P258 522 aaKnown RBP4.36□□□□□ -1.71
SCFD1-221ENST00000556534 TSPYL4Q9UJ04 414 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 NENFQ9UMX5 172 aa4.36□□□□□ -1.71
SCFD1-221ENST00000556534 LAS1LQ9Y4W2 734 aaKnown RBP4.36□□□□□ -1.71
SCFD1-221ENST00000556534 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.36□□□□□ -1.71
SCFD1-221ENST00000556534 ANKRD66B4E2M5 251 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms