RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 UNC45BQ8IWX7 931 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PGAM4Q8N0Y7 254 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 ZNF786Q8N393 782 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 RNF148Q8N7C7 305 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 FAM71DQ8N9W8 422 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 RPLP0P6Q8NHW5 317 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 ERLEC1Q96DZ1 483 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SLC2A13Q96QE2 648 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SORT1Q99523 831 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 KLHL25Q9H0H3 589 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 RIC8BQ9NVN3 520 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 HCN2Q9UL51 889 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TLR6Q9Y2C9 796 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TIMM22Q9Y584 194 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 FAM186AA6NE01 2351 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 GON4LQ3T8J9 2241 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 KIAA1549LQ6ZVL6 1849 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 C1orf232A0A0U1RR37 186 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 RGSL1A5PLK6 1076 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TRIM64BA6NI03 449 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 C3orf70A6NLC5 250 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PRRT4C9JH25 899 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 GFRA2O00451 464 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PLOD2O00469 737 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 IRAK2O43187 625 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CACNG3O60359 315 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 GLRA3O75311 464 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 AVILO75366 819 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 DAB1O75553 588 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TOP3BO95985 862 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 MOCS2O96007 188 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 GSRP00390 522 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 ALOX5P09917 674 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CISD3P0C7P0 127 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SP9P0CG40 484 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 ENO3P13929 434 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TCEA1P23193 301 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PIK3R1P27986 724 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 RCVRNP35243 200 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PXNP49023 591 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 HNRNPFP52597 415 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 NUBP1P53384 320 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PTPN5P54829 565 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 ABCE1P61221 599 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PRAMEP78395 509 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 GNA12Q03113 381 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 DMWDQ09019 674 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TRAF2Q12933 501 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PMS2P3Q13401 168 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 LRRC32Q14392 662 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 KCNJ11Q14654 390 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 ADGRF1Q5T601 910 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 N4BP2L1Q5TBK1 243 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 GALNT18Q6P9A2 607 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 EPGNQ6UW88 154 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TMEM26Q6ZUK4 368 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 BBS12Q6ZW61 710 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 IGFN1Q86VF2 1251 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 IQCF2Q8IXL9 164 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 FAM217AQ8IXS0 508 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SPEM1Q8N4L4 309 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 RP9Q8TA86 221 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TANKQ92844 425 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 ATOH1Q92858 354 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CLIP3Q96DZ5 547 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SERPINB11Q96P15 392 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 NPY6RQ99463 290 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PRRX2Q99811 253 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 MROQ9BYG7 248 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 MAGEB5Q9BZ81 275 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CDH19Q9H159 772 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 KCNH6Q9H252 994 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 WDR41Q9HAD4 459 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SMYD2Q9NRG4 433 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SACM1LQ9NTJ5 587 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 GPATCH2LQ9NWQ4 482 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 MARK1Q9P0L2 795 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TMEM9Q9P0T7 183 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 DEC1Q9P2X7 70 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 IPO11Q9UI26 975 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 VPS51Q9UID3 782 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 STOML2Q9UJZ1 356 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 STAP1Q9ULZ2 295 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CARD8Q9Y2G2 431 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 R4GN57 208 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 GVINP1Q7Z2Y8 2422 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 A0A0A0MRY4 1105 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TBC1D3BA6NDS4 549 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 I6L893 689 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 K7ESF4 209 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ACOT8O14734 319 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 APOEP02649 317 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TDGF1P13385 188 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 MAP4P27816 1152 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TIE1P35590 1138 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 EIF2DP41214 584 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 KIR2DL1P43626 348 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CXCL12P48061 93 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms