RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 FADS2P1A8MWK0 482 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 POLR1CO15160 346 aaPredicted RBP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 MFSD11O43934 449 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 NUAK1O60285 661 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 PTMAP06454 111 aaKnown RBP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 ZFXP17010 805 aaPredicted RBP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 CA4P22748 312 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 OAS2P29728 719 aaKnown RBP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 STAT5AP42229 794 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 EPHB1P54762 984 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 UBE2IP63279 158 aaKnown RBP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 DSC2Q02487 901 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 NIPAL4Q0D2K0 466 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 NCBP2-AS2Q69YL0 99 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 TIGD7Q6NT04 549 aaPredicted RBP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 MFSD7Q6UXD7 560 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 PEX26Q7Z412 305 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 PLXDC1Q8IUK5 500 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 UNC5BQ8IZJ1 945 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 LRRC57Q8N9N7 239 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 ABHD17AQ96GS6 310 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 ZMYND15Q9H091 742 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 CARD9Q9H257 536 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 FAM83DQ9H4H8 585 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 PCDH9Q9HC56 1237 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 HAUS2Q9NVX0 235 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 RBM22Q9NW64 420 aaKnown RBP eCLIP11.7□□□□□ -0.54
CKAP4-202ENST00000552828 CPNE7Q9UBL6 633 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 AMFRQ9UKV5 643 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 GUCA1BQ9UMX6 200 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 KCNK6Q9Y257 313 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 PCDHA3Q9Y5H8 950 aa11.7□□□□□ -0.54
CKAP4-202ENST00000552828 CCDC66A2RUB6 948 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 ESPNB1AK53 854 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 ANKRD66B4E2M5 251 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 APOL1O14791 398 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 TOX3O15405 576 aaPredicted RBP11.69□□□□□ -0.54
CKAP4-202ENST00000552828 GRID2O43424 1007 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 C9P02748 559 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 PRKAR1AP10644 381 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 ACP5P13686 325 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 XRCC1P18887 633 aaPredicted RBP11.69□□□□□ -0.54
CKAP4-202ENST00000552828 MX2P20592 715 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 CTNNA1P35221 906 aaKnown RBP11.69□□□□□ -0.54
CKAP4-202ENST00000552828 CDKN2BP42772 138 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 TFDP2Q14188 446 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 IGFBP7Q16270 282 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 SLC9A4Q6AI14 798 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 ZNF662Q6ZS27 426 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 RFX6Q8HWS3 928 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 CCDC50Q8IVM0 306 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 ESX1Q8N693 406 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 UBE2Q2Q8WVN8 375 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 STARD8Q92502 1023 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 KRT35Q92764 455 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 TRIM44Q96DX7 344 aaPredicted RBP11.69□□□□□ -0.54
CKAP4-202ENST00000552828 RBM41Q96IZ5 413 aaKnown RBP11.69□□□□□ -0.54
CKAP4-202ENST00000552828 ZNF830Q96NB3 372 aaPredicted RBP11.69□□□□□ -0.54
CKAP4-202ENST00000552828 TBC1D10AQ9BXI6 508 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 ZNF71Q9NQZ8 489 aaPredicted RBP11.69□□□□□ -0.54
CKAP4-202ENST00000552828 DOPEY2Q9Y3R5 2298 aa11.69□□□□□ -0.54
CKAP4-202ENST00000552828 C1orf232A0A0U1RR37 186 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 PRR19A6NJB7 356 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 GPR89AB7ZAQ6 455 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 CHUKO15111 745 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 SNX2O60749 519 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 NTRK1P04629 796 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 HLA-DQB2P05538 268 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 MMP2P08253 660 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 GPR89BP0CG08 455 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 ZNF8P17098 575 aaPredicted RBP11.68□□□□□ -0.54
CKAP4-202ENST00000552828 TCN2P20062 427 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 F8A1P23610 371 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 CTNNA2P26232 953 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 CETN2P41208 172 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 MARCKSL1P49006 195 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 RWDD2BP57060 319 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 COPS2P61201 443 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 GBE1Q04446 702 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 TAZQ16635 292 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 QPCTQ16769 361 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 DEFB109BQ30KR1 87 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 LACTB2Q53H82 288 aaPredicted RBP11.68□□□□□ -0.54
CKAP4-202ENST00000552828 TFDP3Q5H9I0 405 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 KAZNQ674X7 775 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 SPOCD1Q6ZMY3 1216 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 BZW1Q7L1Q6 419 aaKnown RBP11.68□□□□□ -0.54
CKAP4-202ENST00000552828 KDELC2Q7Z4H8 507 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 NT5DC3Q86UY8 548 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 PHYKPLQ8IUZ5 450 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 UBL4BQ8N7F7 174 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 PLD5Q8N7P1 536 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 LPCAT1Q8NF37 534 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 CCHCR1Q8TD31 782 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 EID2BQ96D98 161 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 PDLIM2Q96JY6 352 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 C9orf72Q96LT7 481 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 PLEKHG4BQ96PX9 1271 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 PRDM8Q9NQV8 689 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 DTLQ9NZJ0 730 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms