RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 POLR2FP61218 127 aaKnown RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 MAXP61244 160 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 RPS18P62269 152 aaKnown RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 DOC2BQ14184 412 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 IL11RAQ14626 422 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 KIR2DS5Q14953 304 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 CAMK4Q16566 473 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 LRRC66Q68CR7 880 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 RFX8Q6ZV50 586 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 Q8NA96 180 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 EXD1Q8NHP7 514 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 PIH1D2Q8WWB5 315 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 ZNF599Q96NL3 588 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 PEBP4Q96S96 227 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 SNRNP25Q9BV90 132 aaKnown RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 BRD8Q9H0E9 1235 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 ZNF768Q9H5H4 540 aaKnown RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 AKIRIN1Q9H9L7 192 aaPredicted RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 MLXIPLQ9NP71 852 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 NLRC4Q9NPP4 1024 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 LHX9Q9NQ69 397 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 ACSS2Q9NR19 701 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 PCSK1NQ9UHG2 260 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 ERRFI1Q9UJM3 462 aaPredicted RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 PCDHGA9Q9Y5G4 932 aaKnown RBP10.35□□□□□ -0.75
VPS29-208ENST00000550267 SLC30A1Q9Y6M5 507 aa10.35□□□□□ -0.75
VPS29-208ENST00000550267 TNRC6AQ8NDV7 1962 aaKnown RBP10.34□□□□□ -0.75
VPS29-208ENST00000550267 WIPF3A6NGB9 483 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 TMEM229AB2RXF0 380 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 C21orf140B9A014 251 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 EPHB6O15197 1021 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 KIF1CO43896 1103 aaKnown RBP10.34□□□□□ -0.75
VPS29-208ENST00000550267 RASSF9O75901 435 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 UBXN7O94888 489 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 TIAF1O95411 115 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 PEX11BO96011 259 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 PDHA1P08559 390 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 SLC2A4P14672 509 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 GATA4P43694 442 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 JAM2P57087 298 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 UBE2IP63279 158 aaKnown RBP10.34□□□□□ -0.75
VPS29-208ENST00000550267 UGT8Q16880 541 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 PPP6R3Q5H9R7 873 aaPredicted RBP10.34□□□□□ -0.75
VPS29-208ENST00000550267 ARMC12Q5T9G4 340 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 C1QL3Q5VWW1 255 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 FAM199XQ6PEV8 388 aaPredicted RBP10.34□□□□□ -0.75
VPS29-208ENST00000550267 DCUN1D2Q6PH85 259 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 ZNF765Q7L2R6 523 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 MLKLQ8NB16 471 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 PLPP7Q8NBV4 271 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 PLEKHG4BQ96PX9 1271 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 MGME1Q9BQP7 344 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 SLC29A3Q9BZD2 475 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 SEPT11Q9NVA2 429 aaKnown RBP10.34□□□□□ -0.75
VPS29-208ENST00000550267 SCHIP1Q9P0W5 487 aaPredicted RBP10.34□□□□□ -0.75
VPS29-208ENST00000550267 VPS18Q9P253 973 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 CNOT6Q9ULM6 557 aaKnown RBP10.34□□□□□ -0.75
VPS29-208ENST00000550267 PPIL1Q9Y3C6 166 aa10.34□□□□□ -0.75
VPS29-208ENST00000550267 OR5K4A6NMS3 321 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 EIF3CLB5ME19 914 aaKnown RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 TOX3O15405 576 aaPredicted RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 MT-ND3P03897 115 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 PYGLP06737 847 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 DESP17661 470 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 AMD1P17707 334 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 ELAVL4P26378 380 aaKnown RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 HSPA9P38646 679 aaKnown RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 STC1P52823 247 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 IL10RAQ13651 578 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 ERMARDQ5T6L9 678 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 PAPD7Q5XG87 772 aaKnown RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 JMJD6Q6NYC1 403 aaPredicted RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 TMEM26Q6ZUK4 368 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 PPP1R3BQ86XI6 285 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 ARFGAP1Q8N6T3 406 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 THAP4Q8WY91 577 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 WDR24Q96S15 920 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 EIF3CQ99613 913 aaKnown RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 ING2Q9H160 280 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 UCK1Q9HA47 277 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 SLAMF7Q9NQ25 335 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 FAM207AQ9NSI2 230 aaPredicted RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 SAMSN1Q9NSI8 373 aaKnown RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 TAB2Q9NYJ8 693 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 CWC15Q9P013 229 aaKnown RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 ZNF451Q9Y4E5 1061 aa10.33□□□□□ -0.76
VPS29-208ENST00000550267 TEP1Q99973 2627 aaKnown RBP10.33□□□□□ -0.76
VPS29-208ENST00000550267 CSMD1Q96PZ7 3565 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 A0A0J9YYE9 177 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 FADS2P1A8MWK0 482 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 GRID2O43424 1007 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 KRT86O43790 486 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 FZD6O60353 706 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 MAFKO60675 156 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 LRCH4O75427 683 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 KRT38O76015 456 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 VIPP01282 170 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 TRBC1P01850 177 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 ZNF30P17039 623 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 PSMA2P25787 234 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms