RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 RTN3O95197 1032 aaPredicted RBP13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 G6PDP11413 515 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 ZNF26P17031 533 aaPredicted RBP13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 HOXD9P28356 352 aaPredicted RBP13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 HOXC13P31276 330 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 HSPA14Q0VDF9 509 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 MAELQ96JY0 434 aaKnown RBP13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 BEGAINQ9BUH8 593 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 CLPBQ9H078 707 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 RAB26Q9ULW5 256 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 FAF1Q9UNN5 650 aaPredicted RBP13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 ANKRD66B4E2M5 251 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 CASQ2O14958 399 aaPredicted RBP13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 NBNO60934 754 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 E2F6O75461 281 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 GALK1P51570 392 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 ZNF33AQ06730 810 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 AP5B1Q2VPB7 878 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 LRRC8DQ7L1W4 858 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 LRRC49Q8IUZ0 686 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 HS3ST5Q8IZT8 346 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 OR2T11Q8NH01 316 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 FEM1CQ96JP0 617 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 C8orf48Q96LL4 319 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 RANBP9Q96S59 729 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 ATOH8Q96SQ7 321 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 ZDHHC7Q9NXF8 308 aa13.53□□□□□ -0.24
PRPF40B-209ENST00000548825 LOC285095A0A1B0GVY8 99 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 ZNF189O75820 626 aaPredicted RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 PRAMEF1O95521 474 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 FAM163BP0C2L3 166 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 SLC6A2P23975 617 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 NEK2P51955 445 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 POLR2JP52435 117 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 AFTPHQ6ULP2 937 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 CMTR2Q8IYT2 770 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 BCL7CQ8WUZ0 217 aaPredicted RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 IPPKQ9H8X2 491 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 SMOXQ9NWM0 555 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 SUCOQ9UBS9 1254 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 NOBOXO60393 691 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 SLC25A14O95258 325 aaPredicted RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 CLDN7O95471 211 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 PABPC4LP0CB38 370 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 SLC7A1P30825 629 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 HOXC8P31273 242 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 TIAL1Q01085 375 aaKnown RBP eCLIP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 CBLBQ13191 982 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 BOP1Q14137 746 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 HERC3Q15034 1050 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 GPR107Q5VW38 600 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 LETMD1Q6P1Q0 360 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 GCNT7Q6ZNI0 430 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 MARVELD2Q8N4S9 558 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 OR56A4Q8NGH8 313 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 FUBP3Q96I24 572 aaKnown RBP eCLIP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 PRICKLE1Q96MT3 831 aaPredicted RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 TDRD1Q9BXT4 1180 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 ADGRE3Q9BY15 652 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 MRPL40Q9NQ50 206 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 OLA1Q9NTK5 396 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 WARS2Q9UGM6 360 aaKnown RBP13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 LIMD1Q9UGP4 676 aa13.52□□□□□ -0.24
PRPF40B-209ENST00000548825 SYCE1LA8MT33 242 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 SMAD6O43541 496 aaKnown RBP13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 CA12O43570 354 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 SEC22BO75396 215 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 SNAP29O95721 258 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 HK3P52790 923 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 CASP9P55211 416 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 OR4D2P58180 307 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 PIGFQ07326 219 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 TGFBIQ15582 683 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 UGT3A2Q3SY77 523 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 LRRC23Q53EV4 343 aaPredicted RBP13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 PHACTR4Q8IZ21 702 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 HS6ST3Q8IZP7 471 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 MIPOL1Q8TD10 442 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 TCF12Q99081 682 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 ARNT2Q9HBZ2 717 aa13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 MRM3Q9HC36 420 aaKnown RBP13.52□□□□□ -0.25
PRPF40B-209ENST00000548825 PTGES3LE9PB15 166 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 PFDN6O15212 129 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 KERAO60938 352 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 B3GALT4O96024 378 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 PRKACGP22612 351 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 YBEYP58557 167 aaPredicted RBP13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 ESRRGP62508 458 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 CYP4F8P98187 520 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 SP3Q02447 781 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 SREBF2Q12772 1141 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 SELPLGQ14242 412 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 B3GNT6Q6ZMB0 384 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 GALNT10Q86SR1 603 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 OR10A6Q8NH74 314 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 TRMOQ9BU70 441 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 SQORQ9Y6N5 450 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 DNAH14Q0VDD8 3507 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 VILLO15195 856 aa13.51□□□□□ -0.25
PRPF40B-209ENST00000548825 ERVPABLB-1P60509 514 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms