RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PLEKHH3Q7Z736 793 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 GALNT5Q7Z7M9 940 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 WDR49Q8IV35 697 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 C7orf61Q8IZ16 206 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 BBS5Q8N3I7 341 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 FIBCD1Q8N539 461 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 NAT8LQ8N9F0 302 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 AFG1LQ8WV93 481 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 NXNL1Q96CM4 212 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PTCD3Q96EY7 689 aaKnown RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PPM1MQ96MI6 270 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 C20orf27Q9GZN8 174 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 SENP6Q9GZR1 1112 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 AMBNQ9NP70 447 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 POLE4Q9NR33 117 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 MAP3K20Q9NYL2 800 aaKnown RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 ANAPC2Q9UJX6 822 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 GDF2Q9UK05 429 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-203ENST00000547825 RAB26Q9ULW5 256 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 RNF112Q9ULX5 631 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PKP3Q9Y446 797 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 PMF1-BGLAPU3KQ54 211 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 A0A0A0MRY4 1105 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MAGEB2O15479 319 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 IDH3BO43837 385 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 FAM20BO75063 409 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PRKD3O94806 890 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CCNE2O96020 404 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 C1QAP02745 245 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MTHFD1P11586 935 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 AKAP5P24588 427 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 NKX2-5P52952 324 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 GABREP78334 506 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MRPL28Q13084 256 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 FRG1Q14331 258 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 INAQ16352 499 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CA9Q16790 459 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 LY6KQ17RY6 165 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 EEF1DP3Q658K8 133 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 FSTL4Q6MZW2 842 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SLC7A5P1Q8MH63 180 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 C8orf59Q8N0T1 100 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CHST13Q8NET6 341 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 DNAJB8Q8NHS0 232 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SLC2A14Q8TDB8 520 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ESAMQ96AP7 390 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PHF21AQ96BD5 680 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 LRRC39Q96DD0 335 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 P2RY11Q96G91 374 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 TNIP3Q96KP6 325 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 FAM167AQ96KS9 214 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SPATA13Q96N96 652 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PPP1R10Q96QC0 940 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ACOX2Q99424 681 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PARVBQ9HBI1 364 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PCDH18Q9HCL0 1135 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 NT5MQ9NPB1 228 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PXMP2Q9NR77 195 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 GFOD1Q9NXC2 390 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 USE1Q9NZ43 259 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 H2AFY2Q9P0M6 372 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 TMEFF2Q9UIK5 374 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 FBXL21Q9UKT6 434 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PRPF19Q9UMS4 504 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SLC8A2Q9UPR5 921 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ASB3Q9Y575 518 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PSAT1Q9Y617 370 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 EI24O14681 340 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 RECQL5O94762 991 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MTA2O94776 668 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SUPT20HL2P0C7V6 817 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CCL5P13501 91 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SLC2A4P14672 509 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CCR1P32246 355 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 IGFALSP35858 605 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 NPY2RP49146 381 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CCT8P50990 548 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 HK2P52789 917 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 XIAPP98170 497 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PTP4A2Q12974 167 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 TRAF3Q13114 568 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 NOMO1Q15155 1222 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 DGUOKQ16854 277 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 FAM98BQ52LJ0 330 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 BROXQ5VW32 411 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 NEK10Q6ZWH5 1172 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MIB1Q86YT6 1006 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 BRSK2Q8IWQ3 736 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 CBARPQ8N350 705 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SLC35B2Q8TB61 432 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 TSPAN17Q96FV3 270 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PLEKHA8Q96JA3 519 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 ADI1Q9BV57 179 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PRRG3Q9BZD7 231 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 PRDM14Q9GZV8 571 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 STN1Q9H668 368 aaKnown RBP5.44□□□□□ -1.54
LIMA1-203ENST00000547825 MOSPD1Q9UJG1 213 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 Q9Y3F1 56 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 TIMM22Q9Y584 194 aa5.44□□□□□ -1.54
LIMA1-203ENST00000547825 SPEGQ15772 3267 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms