RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 DNAAF5Q86Y56 855 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 GALNT13Q8IUC8 556 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 TGIF2LYQ8IUE0 185 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 TRIM48Q8IWZ4 208 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 GALNT16Q8N428 558 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF808Q8N4W9 903 aaPredicted RBP4.7□□□□□ -1.66
LIMS1-214ENST00000542845 WDTC1Q8N5D0 677 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 PHC3Q8NDX5 983 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 HCAR2Q8TDS4 363 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 ADAMTS17Q8TE56 1095 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 NRGNQ92686 78 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 CCDC47Q96A33 483 aaKnown RBP4.7□□□□□ -1.66
LIMS1-214ENST00000542845 PAGE5Q96GU1 130 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 EAF1Q96JC9 268 aaPredicted RBP4.7□□□□□ -1.66
LIMS1-214ENST00000542845 TCF12Q99081 682 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 NPY6RQ99463 290 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 TEX101Q9BY14 249 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 KRTAP4-8Q9BYQ9 185 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 MAGEH1Q9H213 219 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF552Q9H707 407 aaPredicted RBP4.7□□□□□ -1.66
LIMS1-214ENST00000542845 CBX8Q9HC52 389 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 MCCC2Q9HCC0 563 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 METTL14Q9HCE5 456 aaKnown RBP4.7□□□□□ -1.66
LIMS1-214ENST00000542845 SARS2Q9NP81 518 aaKnown RBP4.7□□□□□ -1.66
LIMS1-214ENST00000542845 OGFRQ9NZT2 677 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 ZFATQ9P243 1243 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 CPNE7Q9UBL6 633 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 LHX3Q9UBR4 397 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF212Q9UDV6 495 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 TBC1D29Q9UFV1 150 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 OR12D3Q9UGF7 316 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 TCFL5Q9UL49 500 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 STAP1Q9ULZ2 295 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 COQ4Q9Y3A0 265 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 MFHAS1Q9Y4C4 1052 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 NIPBLQ6KC79 2804 aaeCLIP4.7□□□□□ -1.66
LIMS1-214ENST00000542845 PKDREJQ9NTG1 2253 aa4.7□□□□□ -1.66
LIMS1-214ENST00000542845 CCDC168Q8NDH2 2452 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 A0A096LPE4 126 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 IGHV5-51A0A0C4DH38 117 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 A0A0U1RQS6 177 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 A0A1W2PPZ6 126 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 CCDC78A2IDD5 438 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 CFAP69A5D8W1 941 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 FAM72CH0Y354 149 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 GOLGA8SH3BPF8 625 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 PEX12O00623 359 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 E2F3O00716 465 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 VIPP01282 170 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 C9P02748 559 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ATP1A1P05023 1023 aaKnown RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 IVLP07476 585 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 EBLN1P0CF75 366 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ACP5P13686 325 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SOX18P35713 384 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 PBX1P40424 430 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ME1P48163 572 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 FMO5P49326 533 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 IST1P53990 364 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SNX16P57768 344 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ATP11AP98196 1134 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ENPEPQ07075 957 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 GPS2Q13227 327 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF235Q14590 738 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 GRM3Q14832 879 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 MYBPC3Q14896 1274 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 PTPRRQ15256 657 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 GPR19Q15760 415 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SEPT7Q16181 437 aaKnown RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 NFIL3Q16649 462 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 CDO1Q16878 200 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 RAB6CQ53S08 254 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 RNF187Q5TA31 235 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 FAM72AQ5TYM5 149 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 PRAMEF17Q5VTA0 474 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 TMEM198Q66K66 360 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 FAAH2Q6GMR7 532 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 FAM72DQ6L9T8 149 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 CYB5D1Q6P9G0 228 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 TMEM207Q6UWW9 146 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 OLFML1Q6UWY5 402 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 MEX3BQ6ZN04 569 aaKnown RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 Q6ZS92 163 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 Q6ZVL8 140 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 DPPA4Q7L190 304 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ZNF765Q7L2R6 523 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 TRIM46Q7Z4K8 759 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 HSD11B1LQ7Z5J1 315 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SRLQ86TD4 932 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 FAM72BQ86X60 149 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 RAB43Q86YS6 212 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SMYD4Q8IYR2 804 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 LZTR1Q8N653 840 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 SLC38A9Q8NBW4 561 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 C1orf131Q8NDD1 294 aaKnown RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 CHDHQ8NE62 594 aaPredicted RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 RELTQ969Z4 430 aa4.69□□□□□ -1.66
LIMS1-214ENST00000542845 MTFMTQ96DP5 389 aaKnown RBP4.69□□□□□ -1.66
LIMS1-214ENST00000542845 ZDHHC12Q96GR4 267 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms