RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 GALNT1Q10472 559 aaPredicted RBP17.03■□□□□ 0.32
SPIDR-227ENST00000541342 CCDC149Q6ZUS6 474 aa17.03■□□□□ 0.32
SPIDR-227ENST00000541342 FAM47BQ8NA70 645 aa17.03■□□□□ 0.32
SPIDR-227ENST00000541342 ALG14Q96F25 216 aa17.03■□□□□ 0.32
SPIDR-227ENST00000541342 RAD9AQ99638 391 aa17.03■□□□□ 0.32
SPIDR-227ENST00000541342 CORO1BQ9BR76 489 aa17.03■□□□□ 0.32
SPIDR-227ENST00000541342 SMG9Q9H0W8 520 aaKnown RBP17.03■□□□□ 0.32
SPIDR-227ENST00000541342 EML4Q9HC35 981 aaKnown RBP17.03■□□□□ 0.32
SPIDR-227ENST00000541342 ARMC1Q9NVT9 282 aa17.03■□□□□ 0.32
SPIDR-227ENST00000541342 RANBP2P49792 3224 aaKnown RBP17.02■□□□□ 0.32
SPIDR-227ENST00000541342 NME4O00746 187 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 GALK1P51570 392 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 SLC7A9P82251 487 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 AGAP9Q5VTM2 703 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 ZNF783Q6ZMS7 281 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 ZBTB49Q6ZSB9 765 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 DHFR2Q86XF0 187 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 BBS7Q8IWZ6 715 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 SMIM14Q96QK8 99 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 SMOXQ9NWM0 555 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.02■□□□□ 0.32
SPIDR-227ENST00000541342 CFAP97Q9P2B7 532 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 GIMAP2Q9UG22 337 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 IRAK3Q9Y616 596 aa17.02■□□□□ 0.32
SPIDR-227ENST00000541342 PPP6CO00743 305 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 SRP72O76094 671 aaKnown RBP17.02■□□□□ 0.31
SPIDR-227ENST00000541342 NDST3O95803 873 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 PRLP01236 227 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 CSKP41240 450 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 KPNA2P52292 529 aaKnown RBP17.02■□□□□ 0.31
SPIDR-227ENST00000541342 DCTN2Q13561 401 aaKnown RBP17.02■□□□□ 0.31
SPIDR-227ENST00000541342 KIAA0408Q6ZU52 694 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 LPCAT2Q7L5N7 544 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 ERMP1Q7Z2K6 904 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 LDB1Q86U70 411 aaPredicted RBP17.02■□□□□ 0.31
SPIDR-227ENST00000541342 OR2T34Q8NGX1 318 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 OR2T3Q8NH03 318 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 SCUBE2Q9NQ36 999 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 MARCH4Q9P2E8 410 aaPredicted RBP17.02■□□□□ 0.31
SPIDR-227ENST00000541342 PRKAG2Q9UGJ0 569 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 CIDEBQ9UHD4 219 aa17.02■□□□□ 0.31
SPIDR-227ENST00000541342 CTNNB1P35222 781 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 BMPR1AP36894 532 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 ACVR1Q04771 509 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 IRAK1BP1Q5VVH5 260 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 KRT80Q6KB66 452 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 PIM3Q86V86 326 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 CILP2Q8IUL8 1156 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 CCDC126Q96EE4 140 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 TBATAQ96M53 351 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 TDRD1Q9BXT4 1180 aaKnown RBP17.01■□□□□ 0.31
SPIDR-227ENST00000541342 SLC46A2Q9BY10 475 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 MFSD1Q9H3U5 465 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 POLR3BQ9NW08 1133 aaPredicted RBP17.01■□□□□ 0.31
SPIDR-227ENST00000541342 THEGQ9P2T0 379 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 CLEC4EQ9ULY5 219 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 SPO11Q9Y5K1 396 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 TLL1O43897 1013 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 ACADVLP49748 655 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 TUBA4AP68366 448 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 ACAP2Q15057 778 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 ZNF678Q5SXM1 525 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 HTR3DQ70Z44 454 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 ISCA2Q86U28 154 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 MRPL43Q8N983 215 aaKnown RBP17.01■□□□□ 0.31
SPIDR-227ENST00000541342 OR13C4Q8NGS5 318 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 BRSK1Q8TDC3 778 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 PBXIP1Q96AQ6 731 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 PPWD1Q96BP3 646 aaKnown RBP17.01■□□□□ 0.31
SPIDR-227ENST00000541342 C19orf60Q96EN9 201 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 ALG9Q9H6U8 611 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 ZFC3H1O60293 1989 aaKnown RBP17.01■□□□□ 0.31
SPIDR-227ENST00000541342 TRIM64CA6NLI5 447 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 FXYD1O00168 92 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 SLC7A4O43246 635 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 GPC4O75487 556 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 GLUD1P00367 558 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 IMPDH1P20839 514 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 CLCN4P51793 760 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 HECTD2Q5U5R9 776 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 OR6P1Q8NGX9 317 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 PTERQ96BW5 349 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 CLK4Q9HAZ1 481 aaKnown RBP17.01■□□□□ 0.31
SPIDR-227ENST00000541342 ABCD2Q9UBJ2 740 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 LHX3Q9UBR4 397 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 VPS51Q9UID3 782 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 PCDHGC4Q9Y5F7 938 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 GMEB1Q9Y692 573 aa17.01■□□□□ 0.31
SPIDR-227ENST00000541342 C9JVG2 144 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 BMP10O95393 424 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 NME5P56597 212 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 SH3BP2P78314 561 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 UNC50Q53HI1 259 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 GPR158Q5T848 1215 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 DUS1LQ6P1R4 473 aaKnown RBP17■□□□□ 0.31
SPIDR-227ENST00000541342 APCDD1Q8J025 514 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 CBR4Q8N4T8 237 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 HM13Q8TCT9 377 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 SLC45A3Q96JT2 553 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 EMILIN2Q9BXX0 1053 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms