RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 CPNE6O95741 557 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 ZNF7P17097 686 aaPredicted RBP13.99□□□□□ -0.17
USP28-209ENST00000540925 ACTN2P35609 894 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 MLLT3P42568 568 aaPredicted RBP13.99□□□□□ -0.17
USP28-209ENST00000540925 CTSCP53634 463 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 ERVPABLB-1P60509 514 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 UBE2IP63279 158 aaKnown RBP13.99□□□□□ -0.17
USP28-209ENST00000540925 CCNG2Q16589 344 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 LDLRAP1Q5SW96 308 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 GPRC6AQ5T6X5 926 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 CRTC3Q6UUV7 619 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 XKR5Q6UX68 686 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 WASH2PQ6VEQ5 465 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 ZNF574Q6ZN55 896 aaPredicted RBP13.99□□□□□ -0.17
USP28-209ENST00000540925 CLEC14AQ86T13 490 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 RASGEF1AQ8N9B8 481 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 GLIS1Q8NBF1 620 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 OR13C4Q8NGS5 318 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 C1orf54Q8WWF1 131 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 FGF11Q92914 225 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 TMEM74Q96NL1 305 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 FOXP3Q9BZS1 431 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 WASH6PQ9NQA3 447 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 PRDM8Q9NQV8 689 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 KLC4Q9NSK0 619 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 FKBPLQ9UIM3 349 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 ZKSCAN5Q9Y2L8 839 aa13.99□□□□□ -0.17
USP28-209ENST00000540925 KIR2DS5A0A0G2JLQ3 304 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 A0A0G2JNG1 304 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 MROH6A6NGR9 719 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 ERI2A8K979 691 aaKnown RBP13.98□□□□□ -0.17
USP28-209ENST00000540925 H7C0S8 307 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 KIR2DS3K7RE56 304 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 SGTAO43765 313 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 SRP72O76094 671 aaKnown RBP13.98□□□□□ -0.17
USP28-209ENST00000540925 CRTAMO95727 393 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 BRAFP15056 766 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 CSF2RBP32927 897 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 INHBCP55103 352 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 PDE1BQ01064 536 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 DMPKQ09013 629 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 EIF3IQ13347 325 aaKnown RBP13.98□□□□□ -0.17
USP28-209ENST00000540925 NFATC2Q13469 925 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 KIR2DS5Q14953 304 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 C3orf38Q5JPI3 329 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 AGAP9Q5VTM2 703 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 ZNF398Q8TD17 642 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 NUDT22Q9BRQ3 303 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 KCNF1Q9H3M0 494 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 SEMA6CQ9H3T2 930 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 SYNDIG1Q9H7V2 258 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 SCHIP1Q9P0W5 487 aaPredicted RBP13.98□□□□□ -0.17
USP28-209ENST00000540925 PDP2Q9P2J9 529 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 DRG1Q9Y295 367 aaKnown RBP13.98□□□□□ -0.17
USP28-209ENST00000540925 SSUH2Q9Y2M2 353 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 MGAQ8IWI9 3026 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 ADAMTS20P59510 1910 aa13.98□□□□□ -0.17
USP28-209ENST00000540925 IGLV3-16A0A075B6K0 115 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 TRBV5-4A0A0C4DH59 114 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 GOLGA6L3A6NEY3 463 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 OR5K4A6NMS3 321 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 PLD2O14939 933 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 PSMD3O43242 534 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 KCNJ13O60928 360 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 ITGA2BP08514 1039 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 SLC2A4P14672 509 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 XRCC1P18887 633 aaPredicted RBP13.97□□□□□ -0.17
USP28-209ENST00000540925 ALDH4A1P30038 563 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 GPLD1P80108 840 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 HHEXQ03014 270 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 SEMA5AQ13591 1074 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 ABRAXAS1Q6UWZ7 409 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 REXO1L1PQ8IX06 675 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 CCDC97Q96F63 343 aaPredicted RBP13.97□□□□□ -0.17
USP28-209ENST00000540925 PDLIM2Q96JY6 352 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 ZCCHC2Q9C0B9 1178 aaKnown RBP13.97□□□□□ -0.17
USP28-209ENST00000540925 STRADBQ9C0K7 418 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 UCK1Q9HA47 277 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 RDH14Q9HBH5 336 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 ETNK1Q9HBU6 452 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 NLE1Q9NVX2 485 aaPredicted RBP13.97□□□□□ -0.17
USP28-209ENST00000540925 ZNF624Q9P2J8 865 aaPredicted RBP13.97□□□□□ -0.17
USP28-209ENST00000540925 CPNE7Q9UBL6 633 aa13.97□□□□□ -0.17
USP28-209ENST00000540925 DNMT3AQ9Y6K1 912 aaPredicted RBP13.97□□□□□ -0.17
USP28-209ENST00000540925 TRBV23OR9-2A0A075B6M9 112 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 IGHV5-10-1A0A0J9YXX1 117 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 NRDCO43847 1150 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 FGGP02679 453 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 ETS1P14921 441 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 TPH1P17752 444 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 FDFT1P37268 417 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 HADHAP40939 763 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 LIMK2P53671 638 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 EPHA4P54764 986 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 INSCQ1MX18 579 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 PLA2G4EQ3MJ16 856 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 AMZ1Q400G9 498 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 NKAIN2Q5VXU1 208 aa13.96□□□□□ -0.17
USP28-209ENST00000540925 FAM83HQ6ZRV2 1179 aaPredicted RBP13.96□□□□□ -0.17
USP28-209ENST00000540925 MICALCLQ6ZW33 695 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms