RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 AXIN1O15169 862 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 VPS26AO75436 327 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 PRAMEF1O95521 474 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 TSPAN12O95859 305 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 IL2P60568 153 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 PTGR1Q14914 329 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.74■□□□□ 0.27
USP28-208ENST00000540438 TBCELQ5QJ74 424 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 RBM44Q6ZP01 1051 aaKnown RBP16.74■□□□□ 0.27
USP28-208ENST00000540438 ZNF296Q8WUU4 475 aaPredicted RBP16.74■□□□□ 0.27
USP28-208ENST00000540438 GFM2Q969S9 779 aaKnown RBP16.74■□□□□ 0.27
USP28-208ENST00000540438 KIAA1191Q96A73 305 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 TMEM79Q9BSE2 394 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 TRIM4Q9C037 500 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 LTB4R2Q9NPC1 389 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 LATS2Q9NRM7 1088 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 ATP11BQ9Y2G3 1177 aa16.74■□□□□ 0.27
USP28-208ENST00000540438 CLDN11O75508 207 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 LBPP18428 481 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 LCP2Q13094 533 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 TGFBIQ15582 683 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 PHKG1Q16816 387 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 DEFB115Q30KQ5 88 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 ZNF648Q5T619 568 aaPredicted RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 MFN1Q8IWA4 741 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 L3HYPDHQ96EM0 354 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 RNF208Q9H0X6 261 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 VCX3BQ9H321 246 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 ZFC3H1O60293 1989 aaKnown RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 A0A1B0GVM2 712 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 RSL1D1O76021 490 aaKnown RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 F11P03951 625 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 CR2P20023 1033 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 EFNA1P20827 205 aaPredicted RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 RING1Q06587 406 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 SELPLGQ14242 412 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 TAF1AQ15573 450 aaPredicted RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 SLC14A2Q15849 920 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 ZIK1Q3SY52 487 aaPredicted RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 OTUD3Q5T2D3 398 aaPredicted RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 AFTPHQ6ULP2 937 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 ZBTB49Q6ZSB9 765 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 ADGRG6Q86SQ4 1221 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 SERPINA9Q86WD7 417 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 ZSWIM9Q86XI8 627 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 CCDC117Q8IWD4 279 aaPredicted RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 BBS7Q8IWZ6 715 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 CMTM8Q8IZV2 173 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 CBR4Q8N4T8 237 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 FOXJ1Q92949 421 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 IGSF21Q96ID5 467 aa16.73■□□□□ 0.27
USP28-208ENST00000540438 C6orf203Q9P0P8 240 aaPredicted RBP16.73■□□□□ 0.27
USP28-208ENST00000540438 ASPDHA6ND91 283 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 FXYD1O00168 92 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 KERAO60938 352 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 YAP1P46937 504 aaKnown RBP16.72■□□□□ 0.27
USP28-208ENST00000540438 TLE2Q04725 743 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 CMPK2Q5EBM0 449 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 TMEM150AQ86TG1 271 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 PHYKPLQ8IUZ5 450 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 TBCDQ9BTW9 1192 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 PDP2Q9P2J9 529 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 A0A1W2PRU2 124 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 SLC25A14O95258 325 aaPredicted RBP16.72■□□□□ 0.27
USP28-208ENST00000540438 GABRR2P28476 465 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 CD70P32970 193 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 NR6A1Q15406 480 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 CYP51A1Q16850 503 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 NADK2Q4G0N4 442 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 ZNF461Q8TAF7 563 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 SORCS1Q8WY21 1168 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 DLG3Q92796 817 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 PPP1R2P1Q96PQ5 205 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 PCTPQ9UKL6 214 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 PKP3Q9Y446 797 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 POLR3HQ9Y535 204 aaPredicted RBP16.72■□□□□ 0.27
USP28-208ENST00000540438 RNF103-CHMP3A0A140T963 221 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 H7C4K7 107 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 CLPTM1O96005 669 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 C1QCP02747 245 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 CYBBP04839 570 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 SMIM18P0DKX4 95 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 G6PDP11413 515 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 ZNF26P17031 533 aaPredicted RBP16.72■□□□□ 0.27
USP28-208ENST00000540438 SLC6A2P23975 617 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 POLD2P49005 469 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 NEK2P51955 445 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 GSTA3Q16772 222 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 RFTN2Q52LD8 501 aaPredicted RBP16.72■□□□□ 0.27
USP28-208ENST00000540438 LRRC58Q96CX6 371 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 TMEM169Q96HH4 297 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 SPATA17Q96L03 361 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 HCFC1R1Q9NWW0 138 aa16.72■□□□□ 0.27
USP28-208ENST00000540438 CASQ2O14958 399 aaPredicted RBP16.71■□□□□ 0.27
USP28-208ENST00000540438 INPPL1O15357 1258 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 KIF1CO43896 1103 aaKnown RBP16.71■□□□□ 0.27
USP28-208ENST00000540438 IST1P53990 364 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 NOGQ13253 232 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 ABRAXAS2Q15018 415 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 SF1Q15637 639 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms