RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 C19orf60Q96EN9 201 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 SLC41A2Q96JW4 573 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 POLR1EQ9GZS1 481 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 OR2AG1Q9H205 316 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 POT1Q9NUX5 634 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 SLC23A2Q9UGH3 650 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 G3BP2Q9UN86 482 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 CHKBQ9Y259 395 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 FBN2P35556 2912 aa11.43□□□□□ -0.58
CLSTN3-209ENST00000539982 IGHV5-51A0A0C4DH38 117 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 C1orf232A0A0U1RR37 186 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 CHUKO15111 745 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 KMOO15229 486 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 KRT86O43790 486 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 MTA2O94776 668 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 TMEM63AO94886 807 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 SLC25A14O95258 325 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 TPM2P07951 284 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 ZNF7P17097 686 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 PTGIRP43119 386 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 RPL26P61254 145 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 GPR18Q14330 331 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 KRT31Q15323 416 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 NR6A1Q15406 480 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 NFKBIBQ15653 356 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 DPYSL2Q16555 572 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 BOLA3Q53S33 107 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 ANKRD20A8PQ5CZ79 823 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 ZRANB3Q5FWF4 1079 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 CT47A1Q5JQC4 288 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 ZNF648Q5T619 568 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 IZUMO3Q5VZ72 239 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 WASH2PQ6VEQ5 465 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 ADGRG6Q86SQ4 1221 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 LRRC49Q8IUZ0 686 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 NEK11Q8NG66 645 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 CCHCR1Q8TD31 782 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 ADAMTS17Q8TE56 1095 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 SNRNP40Q96DI7 357 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 CSPG4P5Q96PW8 444 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 NUDT9Q9BW91 350 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 TDRD1Q9BXT4 1180 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 WASH6PQ9NQA3 447 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 TAS2R14Q9NYV8 317 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 PKD2L2Q9NZM6 624 aa11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 RPL26L1Q9UNX3 145 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-209ENST00000539982 PDZK1P1A8MUH7 402 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 ZNF185O15231 689 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 JCHAINP01591 159 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 CCDC172P0C7W6 258 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 BRAFP15056 766 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 CA4P22748 312 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 SERPINB6P35237 376 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 PCK1P35558 622 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 UBE2HP62256 183 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 KCNAB1Q14722 419 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 SEPT7Q16181 437 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 INSCQ1MX18 579 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 PLEKHN1Q494U1 663 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 TDRD12Q587J7 1177 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 AGAP9Q5VTM2 703 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 ALG1LQ6GMV1 187 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 ZNF517Q6ZMY9 492 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 MED25Q71SY5 747 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 KMT5CQ86Y97 462 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 GLIS1Q8NBF1 620 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 LPCAT1Q8NF37 534 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 MR1Q95460 341 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 CXorf40BQ96DE9 158 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 ZNF514Q96K75 400 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 PCMTD1Q96MG8 357 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 SMAD5Q99717 465 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 TIMM29Q9BSF4 260 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 TRIM7Q9C029 511 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 PCDH9Q9HC56 1237 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 ARFGAP3Q9NP61 516 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 FGF21Q9NSA1 209 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 ASF1BQ9NVP2 202 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 DNAJC16Q9Y2G8 782 aa11.41□□□□□ -0.58
CLSTN3-209ENST00000539982 OTOGQ6ZRI0 2925 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 CSMD1Q96PZ7 3565 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 ANKUB1A6NFN9 424 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 A6NL46 340 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 OR52A4PA6NMU1 304 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 TMCO5BA8MYB1 307 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 GOLGA6L22H0YM25 854 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 ATMINO43313 823 aaPredicted RBP11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 CPNE3O75131 537 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 SCRG1O75711 98 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 KLK3P07288 261 aaPredicted RBP11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 EBLN1P0CF75 366 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 FERP16591 822 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 IDSP22304 550 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 RPL10P27635 214 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 IL1R2P27930 398 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 ARL4DP49703 201 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 ITGA1P56199 1179 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 PPP1CAP62136 330 aa11.4□□□□□ -0.58
CLSTN3-209ENST00000539982 DSC2Q02487 901 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms