RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 CYP3A4P08684 503 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 SPATA31C1P0DKV0 1188 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 ARCN1P48444 511 aaKnown RBP10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 GPR85P60893 370 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 GPAT3Q53EU6 434 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 C6orf141Q5SZD1 244 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 LRRC8DQ7L1W4 858 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 PHF13Q86YI8 300 aaPredicted RBP10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 CMTR2Q8IYT2 770 aaKnown RBP10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 ADGRG5Q8IZF4 528 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 ANKRD52Q8NB46 1076 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 BLOC1S5Q8TDH9 187 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 EBNA1BP2Q99848 306 aaKnown RBP10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 TMEM168Q9H0V1 697 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 GPRC5CQ9NQ84 441 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 SLC35C2Q9NQQ7 365 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 PRDM8Q9NQV8 689 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 ING3Q9NXR8 418 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 SCN3BQ9NY72 215 aa10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 PNMA8BQ9ULN7 279 aaPredicted RBP10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 MTF2Q9Y483 593 aaPredicted RBP10.8□□□□□ -0.68
CLSTN3-207ENST00000537408 CCDC182A6NF36 153 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 HLA-DRAP01903 254 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 PRKCDQ05655 676 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 DBPQ10586 325 aaPredicted RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 BTBD16Q32M84 506 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 FAM45BPQ6NSW5 357 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 PM20D2Q8IYS1 436 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 FAM45AQ8TCE6 357 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 TOE1Q96GM8 510 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 DCSTAMPQ9H295 470 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 POLMQ9NP87 494 aaPredicted RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 DPP7Q9UHL4 492 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 ORC6Q9Y5N6 252 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 DOCK2Q92608 1830 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 CCDC78A2IDD5 438 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 INPP4BO15327 924 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 CAPN5O15484 640 aaPredicted RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 RPS5P46782 204 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 GCNT1Q02742 428 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 MRPL28Q13084 256 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 SIAH1Q8IUQ4 282 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 FNDC5Q8NAU1 212 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 OR8H1Q8NGG4 311 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 BIRC7Q96CA5 298 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 USB1Q9BQ65 265 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 MUC13Q9H3R2 512 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 ASNSD1Q9NWL6 643 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 MAFFQ9ULX9 164 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 TPRKBQ9Y3C4 175 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 A0A0X1KG70 313 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 EFCAB9A8MZ26 197 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 OR2B3O76000 313 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 SMIM10L2AP0DMW4 78 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 SMIM10L2BP0DMW5 78 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 MSH3P20585 1137 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 PSMA2P25787 234 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 GRIA1P42261 906 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 MLLT3P42568 568 aaPredicted RBP10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 TFDP2Q14188 446 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 UGP2Q16851 508 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 CORO6Q6QEF8 472 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 SCARA5Q6ZMJ2 495 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 BBS7Q8IWZ6 715 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 C7orf57Q8NEG2 295 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 SETD6Q8TBK2 473 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 DNAJB3Q8WWF6 145 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 AKAP1Q92667 903 aaKnown RBP eCLIP10.79□□□□□ -0.682e-9■■■■□ 25.8
CLSTN3-207ENST00000537408 SCYL1Q96KG9 808 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 ROGDIQ9GZN7 287 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 SLC6A15Q9H2J7 730 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 DTLQ9NZJ0 730 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 TMEM181Q9P2C4 612 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 COMMD10Q9Y6G5 202 aa10.79□□□□□ -0.68
CLSTN3-207ENST00000537408 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 SPATA31C2B4DYI2 1134 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 UBDO15205 165 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 GSRP00390 522 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 UMPSP11172 480 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 TFEBP19484 476 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 RGS7P49802 495 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 DGCR6Q14129 220 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 METTL23Q86XA0 190 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 GPD1LQ8N335 351 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 ROPN1LQ96C74 230 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 MYRFLQ96LU7 910 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 CCDC32Q9BV29 185 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 SLC39A1Q9NY26 324 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 RBAKQ9NYW8 714 aaPredicted RBP10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 USE1Q9NZ43 259 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 EIF3KQ9UBQ5 218 aaKnown RBP10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 PCDHGB6Q9Y5F9 930 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 F8VP50 259 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 KCNN4O15554 427 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 NRP2O60462 931 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 SNX4O95219 450 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 GNA15P30679 374 aa10.78□□□□□ -0.68
CLSTN3-207ENST00000537408 GNPDA1P46926 289 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms