RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SYCE2Q6PIF2 218 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 FBXO39Q8N4B4 442 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 HPS4Q9NQG7 708 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 ZDHHC3Q9NYG2 299 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 A8MUI8 341 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 UPK3BL1B0FP48 263 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 UPK3BL2E5RIL1 263 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 SDHDO14521 159 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 DCXO43602 365 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 CYP2A6P11509 494 aaPredicted RBP20.48■□□□□ 0.87
VPS28-209ENST00000528142 HK3P52790 923 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 CDH13P55290 713 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 PDGFRLQ15198 375 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 ZNF805Q5CZA5 627 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 TANGO2Q6ICL3 276 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 KIRREL3Q8IZU9 778 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 FBXO27Q8NI29 283 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 ASB2Q96Q27 587 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 C1QTNF3Q9BXJ4 246 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 ZNF385DQ9H6B1 395 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 PCDH12Q9NPG4 1184 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 TRAF6Q9Y4K3 522 aa20.48■□□□□ 0.87
VPS28-209ENST00000528142 STX16-NPEPL1H3BU86 382 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 STX16O14662 325 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 SLC25A14O95258 325 aaPredicted RBP20.47■□□□□ 0.87
VPS28-209ENST00000528142 TSPAN8P19075 237 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 ST8SIA6P61647 398 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 SH3BP2P78314 561 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 SATB1Q01826 763 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 BTKQ06187 659 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 HYAL1Q12794 435 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 ARHGEF7Q14155 803 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 GPRC6AQ5T6X5 926 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 TMPRSS6Q8IU80 811 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 CPSF7Q8N684 471 aaKnown RBP20.47■□□□□ 0.87
VPS28-209ENST00000528142 ZNF366Q8N895 744 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 RBM15BQ8NDT2 890 aaKnown RBP20.47■□□□□ 0.87
VPS28-209ENST00000528142 FAM13CQ8NE31 585 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 MEAF6Q9HAF1 191 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 SDAD1Q9NVU7 687 aaKnown RBP eCLIP20.47■□□□□ 0.87
VPS28-209ENST00000528142 THG1LQ9NWX6 298 aaKnown RBP20.47■□□□□ 0.87
VPS28-209ENST00000528142 DEC1Q9P2X7 70 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 TMPRSS11EQ9UL52 423 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 PLA2G4CQ9UP65 541 aa20.47■□□□□ 0.87
VPS28-209ENST00000528142 PRRC2BQ5JSZ5 2229 aaKnown RBP20.47■□□□□ 0.87
VPS28-209ENST00000528142 IGLV3-16A0A075B6K0 115 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 CDK14O94921 469 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 ATP6V1G2O95670 118 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 FGF4P08620 206 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 RPS17P08708 135 aaKnown RBP20.46■□□□□ 0.87
VPS28-209ENST00000528142 ITGB6P18564 788 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 EEF1DP29692 281 aaKnown RBP20.46■□□□□ 0.87
VPS28-209ENST00000528142 NSG1P42857 185 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 INHBCP55103 352 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 B4GALNT1Q00973 533 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 KLF10Q13118 480 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 NAA25Q14CX7 972 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 HSD11B1LQ7Z5J1 315 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 GPSM1Q86YR5 675 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 AFAP1L2Q8N4X5 818 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 ULK4Q96C45 1275 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 NSUN5Q96P11 429 aaKnown RBP20.46■□□□□ 0.87
VPS28-209ENST00000528142 LATS2Q9NRM7 1088 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 PKD2L2Q9NZM6 624 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 CDH7Q9ULB5 785 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 TMCO1Q9UM00 188 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 PPP6CO00743 305 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 TRIM16O95361 564 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 PRDX6P30041 224 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 UGT3A2Q3SY77 523 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 ANKRD54Q6NXT1 300 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 TXNDC11Q6PKC3 985 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 VITQ6UXI7 678 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 PPP2R3CQ969Q6 453 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 COPS8Q99627 209 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 C1orf21Q9H246 121 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 ZNF576Q9H609 170 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 ZFP14Q9HCL3 533 aa20.46■□□□□ 0.87
VPS28-209ENST00000528142 C16orf96A6NNT2 1141 aa20.45■□□□□ 0.86
VPS28-209ENST00000528142 RALGDSQ12967 914 aa20.45■□□□□ 0.86
VPS28-209ENST00000528142 EIF4HQ15056 248 aaKnown RBP20.45■□□□□ 0.86
VPS28-209ENST00000528142 ANKS6Q68DC2 871 aa20.45■□□□□ 0.86
VPS28-209ENST00000528142 CYHR1Q6ZMK1 362 aa20.45■□□□□ 0.86
VPS28-209ENST00000528142 DTX3LQ8TDB6 740 aa20.45■□□□□ 0.86
VPS28-209ENST00000528142 FIS1Q9Y3D6 152 aa20.45■□□□□ 0.86
VPS28-209ENST00000528142 C5orf42Q9H799 3197 aa20.45■□□□□ 0.86
VPS28-209ENST00000528142 SKAP2O75563 359 aaPredicted RBP20.44■□□□□ 0.86
VPS28-209ENST00000528142 DCDC1P59894 354 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 NAA20P61599 178 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 CLCQ05315 142 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 FCHO2Q0JRZ9 810 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 TGFBIQ15582 683 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 TMEM198Q66K66 360 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 CLEC6AQ6EIG7 209 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 SBSNQ6UWP8 590 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 DPPA4Q7L190 304 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 CLYBLQ8N0X4 340 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 ZBTB2Q8N680 514 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 POU5F2Q8N7G0 328 aa20.44■□□□□ 0.86
VPS28-209ENST00000528142 CEP70Q8NHQ1 597 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms