RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 SGF29Q96ES7 293 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 MRGPRX2Q96LB1 330 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 VPS35Q96QK1 796 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 TIMM29Q9BSF4 260 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 ZCCHC2Q9C0B9 1178 aaKnown RBP13.48□□□□□ -0.25
TCOF1-215ENST00000515516 TMEM9Q9P0T7 183 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 EFR3BQ9Y2G0 817 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 DNAJC16Q9Y2G8 782 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 PCDHGA3Q9Y5H0 932 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 SHROOM3Q8TF72 1996 aa13.48□□□□□ -0.25
TCOF1-215ENST00000515516 CCDC66A2RUB6 948 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 A6NCN8 305 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 B4E171 279 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 STX7O15400 261 aaKnown RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 PPFIA2O75334 1257 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 ZNF189O75820 626 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 TJP3O95049 919 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 AMD1P17707 334 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 XRCC1P18887 633 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 IDSP22304 550 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 RBL1P28749 1068 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 TSPAN7P41732 249 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 CHRNA4P43681 627 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 EIF3EP60228 445 aaKnown RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 TMEM115Q12893 351 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 ITGA9Q13797 1035 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 NOMO1Q15155 1222 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 SEPT7Q16181 437 aaKnown RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 ATP13A5Q4VNC0 1218 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 LDLRAP1Q5SW96 308 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 KIAA1614Q5VZ46 1190 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 DARS2Q6PI48 645 aaKnown RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 KIAA1328Q86T90 577 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 PLXDC1Q8IUK5 500 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 TRAPPC5Q8IUR0 188 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 OXNAD1Q96HP4 312 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 DDA1Q9BW61 102 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 OSBPL8Q9BZF1 889 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 RBSNQ9H1K0 784 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 IL26Q9NPH9 171 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 PDP2Q9P2J9 529 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 SLC23A2Q9UGH3 650 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 AAR2Q9Y312 384 aaKnown RBP13.47□□□□□ -0.25
TCOF1-215ENST00000515516 ADGRG1Q9Y653 693 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 ATRXP46100 2492 aa13.47□□□□□ -0.25
TCOF1-215ENST00000515516 COL27A1Q8IZC6 1860 aaPredicted RBP13.46□□□□□ -0.25
TCOF1-215ENST00000515516 GLYATL1P3A0A0U1RQE8 302 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 LILRA5A6NI73 299 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 C2orf81A6NN90 581 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 BTNL10A8MVZ5 291 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.46□□□□□ -0.25
TCOF1-215ENST00000515516 EFSO43281 561 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 KCNJ13O60928 360 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 HALP42357 657 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 OTUD4Q01804 1114 aaKnown RBP13.46□□□□□ -0.25
TCOF1-215ENST00000515516 CHRNA6Q15825 494 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 FAM151BQ6UXP7 276 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 ZNF605Q86T29 641 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 VASH2Q86V25 355 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 DTX1Q86Y01 620 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 TTC30BQ8N4P2 665 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 IL22RA1Q8N6P7 574 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 ACTL9Q8TC94 416 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 DTX3LQ8TDB6 740 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 JPH3Q8WXH2 748 aaPredicted RBP13.46□□□□□ -0.25
TCOF1-215ENST00000515516 TTC9Q92623 222 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 CXorf40BQ96DE9 158 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 PPP1R2P1Q96PQ5 205 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 TEFMQ96QE5 360 aaKnown RBP13.46□□□□□ -0.25
TCOF1-215ENST00000515516 ARHGAP9Q9BRR9 750 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 FICDQ9BVA6 458 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 TBC1D10AQ9BXI6 508 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 GBA3Q9H227 469 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 UCK1Q9HA47 277 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 OCIAD1Q9NX40 245 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 IL17CQ9P0M4 197 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 KLHL3Q9UH77 587 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 DUSP10Q9Y6W6 482 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 IGSF10Q6WRI0 2623 aa13.46□□□□□ -0.25
TCOF1-215ENST00000515516 RCCD1A6NED2 376 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 GOLGA6L9A6NEM1 432 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 KCNN4O15554 427 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 BUD23O43709 281 aaKnown RBP13.45□□□□□ -0.26
TCOF1-215ENST00000515516 UBXN7O94888 489 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 AGTP01019 485 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 RBP3P10745 1247 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 RPL10P27635 214 aaKnown RBP13.45□□□□□ -0.26
TCOF1-215ENST00000515516 PTPN7P35236 360 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 VAV2P52735 878 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 UBE2IP63279 158 aaKnown RBP13.45□□□□□ -0.26
TCOF1-215ENST00000515516 AGAP9Q5VTM2 703 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 PCSK4Q6UW60 755 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 CEACAM20Q6UY09 585 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 TMEM26Q6ZUK4 368 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 AMZ2Q86W34 360 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 RBM12BQ8IXT5 1001 aaKnown RBP13.45□□□□□ -0.26
TCOF1-215ENST00000515516 SYCE1Q8N0S2 351 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 ZNF843Q8N446 348 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 UBL4BQ8N7F7 174 aa13.45□□□□□ -0.26
TCOF1-215ENST00000515516 BAG1Q99933 345 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms