RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PNLIPP16233 465 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 PBLDP30039 288 aaPredicted RBP11.33□□□□□ -0.6
VCAN-212ENST00000515397 CDKN1CP49918 316 aaPredicted RBP11.33□□□□□ -0.6
VCAN-212ENST00000515397 MAPK10P53779 464 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 TERF1P54274 439 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 ZFP36L1Q07352 338 aaKnown RBP11.33□□□□□ -0.6
VCAN-212ENST00000515397 SEPT6Q14141 434 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 POU6F1Q14863 301 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 TAF1AQ15573 450 aaPredicted RBP11.33□□□□□ -0.6
VCAN-212ENST00000515397 GPRC6AQ5T6X5 926 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 KCTD11Q693B1 232 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 TMEM220Q6QAJ8 160 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 PIM3Q86V86 326 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 LRRTM4Q86VH4 590 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 JAMLQ86YT9 394 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 TRAPPC5Q8IUR0 188 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 WDR36Q8NI36 951 aaKnown RBP11.33□□□□□ -0.6
VCAN-212ENST00000515397 WDR48Q8TAF3 677 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 RNF31Q96EP0 1072 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 SGF29Q96ES7 293 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 TTC25Q96NG3 672 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 SLC38A3Q99624 504 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 TBC1D10AQ9BXI6 508 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 TLR10Q9BXR5 811 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 RMI1Q9H9A7 625 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 GRPEL1Q9HAV7 217 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.33□□□□□ -0.6
VCAN-212ENST00000515397 NFKBIL1Q9UBC1 381 aaPredicted RBP11.33□□□□□ -0.6
VCAN-212ENST00000515397 ZNF148Q9UQR1 794 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 PPP2R2CQ9Y2T4 447 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 LOXL2Q9Y4K0 774 aa11.33□□□□□ -0.6
VCAN-212ENST00000515397 COL27A1Q8IZC6 1860 aaPredicted RBP11.33□□□□□ -0.6
VCAN-212ENST00000515397 NBEAQ8NFP9 2946 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 A0A087WV48 116 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 IGHV5-10-1A0A0J9YXX1 117 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 A6NCN8 305 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 OR52A4PA6NMU1 304 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 PDZK1P1A8MUH7 402 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 PLD2O14939 933 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 CHUKO15111 745 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 KMOO15229 486 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 VEGFDO43915 354 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 POP7O75817 140 aaKnown RBP11.32□□□□□ -0.6
VCAN-212ENST00000515397 PRAMEF1O95521 474 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 CPNE6O95741 557 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 TYRP1P17643 537 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 CSF2RBP32927 897 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 SLC19A1P41440 591 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 GRIA1P42261 906 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 KCNJ1P48048 391 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 XIAPP98170 497 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 HHEXQ03014 270 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 PEX6Q13608 980 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 C16orf72Q14CZ0 275 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 SIX1Q15475 284 aaPredicted RBP11.32□□□□□ -0.6
VCAN-212ENST00000515397 CCDC38Q502W7 563 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 FNBP1LQ5T0N5 605 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.32□□□□□ -0.6
VCAN-212ENST00000515397 PDPK2PQ6A1A2 396 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 LRRC69Q6ZNQ3 347 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 FAM83HQ6ZRV2 1179 aaPredicted RBP11.32□□□□□ -0.6
VCAN-212ENST00000515397 ZNF438Q7Z4V0 828 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 C11orf96Q7Z7L8 435 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 SLITRK4Q8IW52 837 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 OR52K1Q8NGK4 314 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 BRSK1Q8TDC3 778 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 JPH3Q8WXH2 748 aaPredicted RBP11.32□□□□□ -0.6
VCAN-212ENST00000515397 NCSTNQ92542 709 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 DNAJC1Q96KC8 554 aaKnown RBP11.32□□□□□ -0.6
VCAN-212ENST00000515397 TMEM74Q96NL1 305 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 VPS35Q96QK1 796 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 STRADBQ9C0K7 418 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 ZMYND15Q9H091 742 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 ASB8Q9H765 288 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 ETNK1Q9HBU6 452 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 ZNF624Q9P2J8 865 aaPredicted RBP11.32□□□□□ -0.6
VCAN-212ENST00000515397 CPNE7Q9UBL6 633 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 KLHL3Q9UH77 587 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 PSMD13Q9UNM6 376 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 WDR37Q9Y2I8 494 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 PTPRQQ9UMZ3 2332 aa11.32□□□□□ -0.6
VCAN-212ENST00000515397 GOLGA6L3A6NEY3 463 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 RRP8O43159 456 aaKnown RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 KLK10O43240 276 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 LDB2O43679 373 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 CEP104O60308 925 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 SRP72O76094 671 aaKnown RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 FGGP02679 453 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 JMJD7P0C870 316 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 F3P13726 295 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 BRAFP15056 766 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 SLC5A2P31639 672 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 AKT1P31749 480 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 ABCG1P45844 678 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 ZNF140P52738 457 aaPredicted RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 GTF2H3Q13889 308 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 NFE2L1Q14494 772 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 NR1D2Q14995 579 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 CLCA4Q14CN2 919 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 TGIF1Q15583 401 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms