RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CAPN14A8MX76 684 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 PLOD3O60568 738 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 DUSP11O75319 330 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 ARIH2O95376 493 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 TOP3BO95985 862 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 DHRS4L1P0CG22 281 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 AZGP1P25311 298 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 SLC5A2P31639 672 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 IRF9Q00978 393 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 NFATC3Q12968 1075 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 TXNDC11Q6PKC3 985 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CTU1Q7Z7A3 348 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 SLC15A4Q8N697 577 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 LRRC52Q8N7C0 313 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 PIK3C3Q8NEB9 887 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 DDX1Q92499 740 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 C12orf42Q96LP6 360 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 VPS35Q96QK1 796 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CORO1BQ9BR76 489 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 C12orf4Q9NQ89 552 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CCDC177Q9NQR7 707 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CATSPERZQ9NTU4 200 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 RGPD5Q99666 1765 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 SMIM35A0A1B0GVV1 85 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 AGRPO00253 132 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 TSPAN4O14817 238 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 NOBOXO60393 691 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CYP7B1O75881 506 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 DHFRP00374 187 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 PABPC1P11940 636 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 MATKP42679 507 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CSNK2BP67870 215 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 STARD3Q14849 445 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 NPTX1Q15818 432 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 STRADAQ7RTN6 431 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 SIAH1Q8IUQ4 282 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CYP4Z2PQ8N1L4 340 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 ZUFSPQ96AP4 578 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 ADAMTS10Q9H324 1103 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 TPK1Q9H3S4 243 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 KLQ9UEF7 1012 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 SCN11AQ9UI33 1791 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 MFSD11O43934 449 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 SCELO95171 688 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 MMP3P08254 477 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 GSTM1P09488 218 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 EEFSECP57772 596 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 ATP6V0D1P61421 351 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 RPL38P63173 70 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CYP2A13Q16696 494 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 TEX44Q53QW1 395 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 C11orf96Q7Z7L8 435 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 ANKRD13BQ86YJ7 626 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 STARD8Q92502 1023 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 NARS2Q96I59 477 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 NXF3Q9H4D5 531 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 PDP1Q9P0J1 537 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 ATP6V1HQ9UI12 483 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 FAM172BPA6NC97 362 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 C2CD4BA6NLJ0 364 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 SNNO75324 88 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 PCDH8O95206 1070 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 IGFBP4P22692 258 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 GLDCP23378 1020 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 WARSP23381 471 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 PBLDP30039 288 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 GRIA1P42261 906 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 NDST2P52849 883 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CNTN1Q12860 1018 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CTC1Q2NKJ3 1217 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 TPRG1LQ5T0D9 272 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 LCLAT1Q6UWP7 414 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 PRR23BQ6ZRT6 265 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 HEXDCQ8WVB3 486 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 SLC39A3Q9BRY0 314 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 MRPL39Q9NYK5 338 aaKnown RBP11.16□□□□□ -0.62
TCOF1-211ENST00000513346 OPTCQ9UBM4 332 aa11.16□□□□□ -0.62
TCOF1-211ENST00000513346 CDH1P12830 882 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 DARSP14868 501 aaKnown RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 EPB42P16452 691 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 CYP2C18P33260 490 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ETV4P43268 484 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 GSTM5P46439 218 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ACLYP53396 1101 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 MVKQ03426 396 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ACAP2Q15057 778 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 CRY1Q16526 586 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 TRIM71Q2Q1W2 868 aaKnown RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 CCDC28AQ8IWP9 274 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ZNF567Q8N184 647 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 DIRAS2Q96HU8 199 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 OR52E6Q96RD3 313 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 CRISPLD1Q9H336 500 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 VPS51Q9UID3 782 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 OGDHLQ9ULD0 1010 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 GNG14A0A1W2PPG7 69 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 ISPDA4D126 451 aa11.15□□□□□ -0.62
TCOF1-211ENST00000513346 IFRD1O00458 451 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-211ENST00000513346 SEPT4O43236 478 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms