RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 TRIM54Q9BYV2 358 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 MUC3BQ9H195 1237 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 RETREG1Q9H6L5 497 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 SARS2Q9NP81 518 aaKnown RBP9.76□□□□□ -0.85
CLIP1-204ENST00000501271 AGPAT4Q9NRZ5 378 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 SLAMF8Q9P0V8 285 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 ACTR3BQ9P1U1 418 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 ABT1Q9ULW3 272 aaKnown RBP9.76□□□□□ -0.85
CLIP1-204ENST00000501271 PADI4Q9UM07 663 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 SCN8AQ9UQD0 1980 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 A0A1B0GVG6 124 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 CCDC160A6NGH7 325 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 TBKBP1A7MCY6 615 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 PDLIM1O00151 329 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 DLGAP1O14490 977 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 STX7O15400 261 aaKnown RBP9.76□□□□□ -0.85
CLIP1-204ENST00000501271 OR4F21O95013 312 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 PRAMEF12O95522 483 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 MLYCDO95822 493 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 HMGA1P17096 107 aaKnown RBP9.76□□□□□ -0.85
CLIP1-204ENST00000501271 IL12AP29459 219 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 MRPL19P49406 292 aaKnown RBP9.76□□□□□ -0.85
CLIP1-204ENST00000501271 GSK3BP49841 420 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 KCNK10P57789 538 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 IL2P60568 153 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 DYNC1I2Q13409 638 aaKnown RBP9.76□□□□□ -0.85
CLIP1-204ENST00000501271 PABPC1LQ4VXU2 614 aaKnown RBP9.76□□□□□ -0.85
CLIP1-204ENST00000501271 GPRIN3Q6ZVF9 776 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 CHST9Q7L1S5 443 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 GPSM1Q86YR5 675 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 NPAS4Q8IUM7 802 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 ADGRG5Q8IZF4 528 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 CDYL2Q8N8U2 506 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 KCNJ9Q92806 393 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 MPP4Q96JB8 637 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 ANKRD60Q9BZ19 345 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 TRIM15Q9C019 465 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 BRINP2Q9C0B6 783 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 RNF38Q9H0F5 515 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 ALG2Q9H553 416 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 CWH43Q9H720 699 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 OLAHQ9NV23 265 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 PTTG2Q9NZH5 202 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 CD274Q9NZQ7 290 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 TSR3Q9UJK0 312 aaKnown RBP9.76□□□□□ -0.85
CLIP1-204ENST00000501271 LRFN2Q9ULH4 789 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 VPS9D1Q9Y2B5 631 aa9.76□□□□□ -0.85
CLIP1-204ENST00000501271 C2orf78A6NCI8 922 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 E5RI56 91 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 SNX2O60749 519 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 EEDO75530 441 aaKnown RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 SEC24AO95486 1093 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 C1RP00736 705 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 BMP1P13497 986 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CD9P21926 228 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 PSMA4P25789 261 aaKnown RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 OR1D2P34982 312 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 SOX11P35716 441 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CLCN7P51798 805 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 NR1H2P55055 460 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 INPP5AQ14642 412 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TGFBIQ15582 683 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 C18orf21Q32NC0 220 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TIGD2Q4W5G0 525 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 ADGRF1Q5T601 910 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 SLC8B1Q6J4K2 584 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 LETMD1Q6P1Q0 360 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 NCEH1Q6PIU2 408 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 IFNEQ86WN2 208 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 KIAA2013Q8IYS2 634 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CRIPAKQ8N1N5 446 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CBR4Q8N4T8 237 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 PDZD8Q8NEN9 1154 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TSPAN14Q8NG11 270 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 OR56A4Q8NGH8 313 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 EID2BQ96D98 161 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 MYRFLQ96LU7 910 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 TMEM74Q96NL1 305 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 ADGRE3Q9BY15 652 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 INTS7Q9NVH2 962 aaKnown RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 LHX3Q9UBR4 397 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 USP22Q9UPT9 525 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 DMTF1Q9Y222 760 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CCDC154A6NI56 674 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 H3BNH8 94 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 H7C0S8 307 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 HNRNPRO43390 633 aaKnown RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 SLC22A3O75751 556 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 H6PDO95479 791 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CHEK2O96017 543 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 GNAO1P09471 354 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 NCK1P16333 377 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 RPL10P27635 214 aaKnown RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 MZF1P28698 734 aaPredicted RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CASP2P42575 452 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 HTR6P50406 440 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 CLCN4P51793 760 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 POLR2JP52435 117 aaKnown RBP9.75□□□□□ -0.85
CLIP1-204ENST00000501271 ERVPABLB-1P60509 514 aa9.75□□□□□ -0.85
CLIP1-204ENST00000501271 ERVK-8P63133 956 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms