RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CRADDP78560 199 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 DR1Q01658 176 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ACVR1Q04771 509 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 HLTFQ14527 1009 aaKnown RBP eCLIP16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SMAD1Q15797 465 aaKnown RBP16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 AFTPHQ6ULP2 937 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SYDE1Q6ZW31 735 aaPredicted RBP16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 MICALCLQ6ZW33 695 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 C17orf82Q86X59 251 aaPredicted RBP16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 GALNT15Q8N3T1 639 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 MCUQ8NE86 351 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 MAPK15Q8TD08 544 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CCDC74AQ96AQ1 378 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 DCUN1D1Q96GG9 259 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ZNF778Q96MU6 729 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 COPS8Q99627 209 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 OSGEPL1Q9H4B0 414 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CHRAC1Q9NRG0 131 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 KLC4Q9NSK0 619 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SYBUQ9NX95 663 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ZDHHC3Q9NYG2 299 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SLC23A2Q9UGH3 650 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 KLK13Q9UKR3 277 aa16.05■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CCDC162PA2VCL2 907 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 OR51F1A6NGY5 319 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 OR2AG2A6NM03 316 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CFAP99D6REC4 459 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 OPA1O60313 960 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 PRSS56P0CW18 603 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 MLNP12872 115 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 GLB1P16278 677 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 VCLP18206 1134 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ACRV1P26436 265 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 FOXN2P32314 431 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CDKN1CP49918 316 aaPredicted RBP16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CTSCP53634 463 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 PRAMEP78395 509 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 INSM1Q01101 510 aaPredicted RBP16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 HES3Q5TGS1 186 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 TMEM220Q6QAJ8 160 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 DET1Q7L5Y6 550 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 TAS2R42Q7RTR8 314 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 TMPRSS7Q7RTY8 843 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 C11orf96Q7Z7L8 435 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SERPINA9Q86WD7 417 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 TMPRSS12Q86WS5 348 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 PPIL6Q8IXY8 311 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 NAGSQ8N159 534 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 NAT8LQ8N9F0 302 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 HEXDCQ8WVB3 486 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 PATE1Q8WXA2 126 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 HDAC10Q969S8 669 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ZNF514Q96K75 400 aaPredicted RBP16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CCDC3Q9BQI4 270 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 MRM3Q9HC36 420 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 XAB2Q9HCS7 855 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 TBC1D29Q9UFV1 150 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 DNAJC16Q9Y2G8 782 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 NEUROG3Q9Y4Z2 214 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 RNF215Q9Y6U7 377 aa16.04■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 IGLV3-16A0A075B6K0 115 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 GOLGA8MH3BSY2 632 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 DNALI1O14645 258 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SNX2O60749 519 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 AVILO75366 819 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 EML2O95834 649 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 GOT2P00505 430 aaKnown RBP16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SLC2A4P14672 509 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CLDN6P56747 220 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 B4GALNT1Q00973 533 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 DHX34Q14147 1143 aaKnown RBP16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 RNASEH2BQ5TBB1 312 aaKnown RBP16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ARMC3Q5W041 872 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 PCGF5Q86SE9 256 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CAND1Q86VP6 1230 aaKnown RBP16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 JAMLQ86YT9 394 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 PIANPQ8IYJ0 282 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ARL14Q8N4G2 192 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 CCDC97Q96F63 343 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SERPINB12Q96P63 405 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 KIFC1Q9BW19 673 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ABCG4Q9H172 646 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 TREX1Q9NSU2 369 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 LRIT1Q9P2V4 623 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 RABGEF1Q9UJ41 708 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 SOX13Q9UN79 622 aa16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 DNMT3AQ9Y6K1 912 aaPredicted RBP16.03■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ZFC3H1O60293 1989 aaKnown RBP16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 FAM221BA6H8Z2 402 aa16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 A6NCN8 305 aa16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 PRR19A6NJB7 356 aa16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 RHPN2P1A8MT19 583 aa16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 NUDT21O43809 227 aaKnown RBP16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 KCNJ13O60928 360 aa16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 POP7O75817 140 aaKnown RBP16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 F3P13726 295 aa16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 ATP1B2P14415 290 aaPredicted RBP16.02■□□□□ 0.16
MSH5-SAPCD1-206ENST00000491552 PNLIPP16233 465 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms