RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 RBFAQ8N0V3 343 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 IQCKQ8N0W5 287 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 OR56A4Q8NGH8 313 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 PIH1D2Q8WWB5 315 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 NUS1Q96E22 293 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 DTD2Q96FN9 168 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 RANBP9Q96S59 729 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 RUFY1Q96T51 708 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 WDR26Q9H7D7 661 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 VPS37BQ9H9H4 285 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 LRRC4CQ9HCJ2 640 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 PHPT1Q9NRX4 125 aaPredicted RBP16.9■□□□□ 0.3
VIM-205ENST00000485947 SYBUQ9NX95 663 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 SOX13Q9UN79 622 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 DOLKQ9UPQ8 538 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 PLAAQ9Y263 795 aa16.9■□□□□ 0.3
VIM-205ENST00000485947 FAM237BA0A1B0GVD1 139 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 TCEA3O75764 348 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 PRKCGP05129 697 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 MYCLP1P12525 358 aaPredicted RBP16.89■□□□□ 0.29
VIM-205ENST00000485947 GM2AP17900 193 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 CYP4F3Q08477 520 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 PEX6Q13608 980 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 DEFB133Q30KQ1 61 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 SIRPB2Q5JXA9 342 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 CERCAMQ5T4B2 595 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 CASC4Q6P4E1 433 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 ZNF765Q7L2R6 523 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 CROCCP2Q86T23 111 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 LSMEM2Q8N112 164 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 MPP5Q8N3R9 675 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 ARL10Q8N8L6 244 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 PPHLN1Q8NEY8 458 aaKnown RBP16.89■□□□□ 0.29
VIM-205ENST00000485947 MDM1Q8TC05 714 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 IFI44Q8TCB0 444 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 FUBP1Q96AE4 644 aaKnown RBP16.89■□□□□ 0.29
VIM-205ENST00000485947 ZIM3Q96PE6 472 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 LYSMD1Q96S90 227 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 CCDC77Q9BR77 488 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 TEX101Q9BY14 249 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 CLPBQ9H078 707 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 PNMA8BQ9ULN7 279 aaPredicted RBP16.89■□□□□ 0.29
VIM-205ENST00000485947 CHKBQ9Y259 395 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 OR1A2Q9Y585 309 aa16.89■□□□□ 0.29
VIM-205ENST00000485947 ACACAQ13085 2346 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 A0A0J9YYE9 177 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 HEATR9A2RTY3 570 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 SASH3O75995 380 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 USP1O94782 785 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 TRBC1P01850 177 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 POLBP06746 335 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 ADRA1DP25100 572 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 STX2P32856 288 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 CHRNA4P43681 627 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 EPHB1P54762 984 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 GPX6P59796 221 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 FRG1Q14331 258 aaKnown RBP16.88■□□□□ 0.29
VIM-205ENST00000485947 SPANXN3Q5MJ09 141 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 HP1BP3Q5SSJ5 553 aaPredicted RBP16.88■□□□□ 0.29
VIM-205ENST00000485947 ZNF449Q6P9G9 518 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 C3orf62Q6ZUJ4 267 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 CYS1Q717R9 158 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 KDELC2Q7Z4H8 507 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 IGDCC3Q8IVU1 814 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 NRSN1Q8IZ57 195 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 SLC25A41Q8N5S1 370 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 PLA2G15Q8NCC3 412 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 GSDMBQ8TAX9 411 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 MAPK15Q8TD08 544 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 TSACCQ96A04 125 aaPredicted RBP16.88■□□□□ 0.29
VIM-205ENST00000485947 SRPK1Q96SB4 655 aaKnown RBP16.88■□□□□ 0.29
VIM-205ENST00000485947 KIFC1Q9BW19 673 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 TCEAL2Q9H3H9 227 aaPredicted RBP16.88■□□□□ 0.29
VIM-205ENST00000485947 PPCSQ9HAB8 311 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 PIH1D1Q9NWS0 290 aaKnown RBP16.88■□□□□ 0.29
VIM-205ENST00000485947 TCAF1Q9Y4C2 921 aa16.88■□□□□ 0.29
VIM-205ENST00000485947 TDRD6O60522 2096 aaKnown RBP16.87■□□□□ 0.29
VIM-205ENST00000485947 RGSL1A5PLK6 1076 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 NPIPB15A6NHN6 443 aaPredicted RBP16.87■□□□□ 0.29
VIM-205ENST00000485947 PRLP01236 227 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 IVLP07476 585 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 SEMG2Q02383 582 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 IFFO1Q0D2I5 559 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 MSLNQ13421 630 aaPredicted RBP16.87■□□□□ 0.29
VIM-205ENST00000485947 C1orf61Q13536 156 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 CDKN3Q16667 212 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 SOWAHCQ53LP3 525 aaPredicted RBP16.87■□□□□ 0.29
VIM-205ENST00000485947 KDM7AQ6ZMT4 941 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 UNC5AQ6ZN44 842 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 NLRP9Q7RTR0 991 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 EFL1Q7Z2Z2 1120 aaKnown RBP16.87■□□□□ 0.29
VIM-205ENST00000485947 TECPR1Q7Z6L1 1165 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 TMEM135Q86UB9 458 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 SLC35F3Q8IY50 421 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 LPCAT1Q8NF37 534 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 PEX13Q92968 403 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 CFAP36Q96G28 342 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 TMEM109Q9BVC6 243 aa16.87■□□□□ 0.29
VIM-205ENST00000485947 ROPN1BQ9BZX4 212 aaPredicted RBP16.87■□□□□ 0.29
VIM-205ENST00000485947 ROPN1Q9HAT0 212 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms