RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 COPS2P61201 443 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 BIRC2Q13490 618 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 TRA2AQ13595 282 aaKnown RBP eCLIP13.9□□□□□ -0.181e-9■■■■□ 26.1
UPF3A-204ENST00000475218 CHRNA6Q15825 494 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 ARHGAP22Q7Z5H3 698 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 VASH2Q86V25 355 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 SLC38A3Q99624 504 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 OSBPL8Q9BZF1 889 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 B3GNT4Q9C0J1 378 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 TRABDQ9H4I3 376 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 UGT1A7Q9HAW7 530 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 UGT1A10Q9HAW8 530 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 UGT1A8Q9HAW9 530 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 CPNE7Q9UBL6 633 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 RSPH14Q9UHP6 348 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 TRHDEQ9UKU6 1024 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 EFR3BQ9Y2G0 817 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.9□□□□□ -0.18
UPF3A-204ENST00000475218 PCDHGA3Q9Y5H0 932 aa13.9□□□□□ -0.18
UPF3A-204ENST00000475218 ZNF462Q96JM2 2506 aa13.9□□□□□ -0.19
UPF3A-204ENST00000475218 KIR2DS5A0A0G2JLQ3 304 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 A0A0G2JNG1 304 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 KIR2DS3K7RE56 304 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 VEGFDO43915 354 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 SLC19A1P41440 591 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 VAV2P52735 878 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 RHDQ02161 417 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 MPP3Q13368 585 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 KIR2DS5Q14953 304 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 WDR74Q6RFH5 385 aaPredicted RBP13.89□□□□□ -0.19
UPF3A-204ENST00000475218 XKR5Q6UX68 686 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 RANBP10Q6VN20 620 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 CCDC81Q6ZN84 652 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 MICALCLQ6ZW33 695 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 LRRTM4Q86VH4 590 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 ZNF843Q8N446 348 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 DTX3LQ8TDB6 740 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 BLOC1S5Q8TDH9 187 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 SRPK1Q96SB4 655 aaKnown RBP13.89□□□□□ -0.19
UPF3A-204ENST00000475218 TIMM29Q9BSF4 260 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 DNAJC16Q9Y2G8 782 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 B3GALT1Q9Y5Z6 326 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 SLC30A1Q9Y6M5 507 aa13.89□□□□□ -0.19
UPF3A-204ENST00000475218 H7C0C1 242 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 KMOO15229 486 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 CDK14O94921 469 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 HLA-DPA1P20036 260 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 ATP5OP48047 213 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 CTSCP53634 463 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 TMEM115Q12893 351 aaPredicted RBP13.88□□□□□ -0.19
UPF3A-204ENST00000475218 CCDC70Q6NSX1 233 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 FAM151BQ6UXP7 276 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 KLHDC8BQ8IXV7 354 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 RASGEF1AQ8N9B8 481 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 AGBL5Q8NDL9 886 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 OR10G6Q8NH81 332 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 ART4Q93070 314 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 FICDQ9BVA6 458 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 SPRY4Q9C004 299 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 OSGEPL1Q9H4B0 414 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.88□□□□□ -0.19
UPF3A-204ENST00000475218 WDR37Q9Y2I8 494 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 KCTD3Q9Y597 815 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 ARL5AQ9Y689 179 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 CCDC66A2RUB6 948 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 LILRA5A6NI73 299 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 ZW10O43264 779 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 DUX1O43812 170 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 RBP3P10745 1247 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 XRCC1P18887 633 aaPredicted RBP13.88□□□□□ -0.19
UPF3A-204ENST00000475218 PSMB4P28070 264 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 SPAM1P38567 509 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 EPHA4P54764 986 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 INSCQ1MX18 579 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 ANKRD20A2Q5SQ80 823 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 ANKRD20A1Q5TYW2 823 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 ANKRD20A3Q5VUR7 823 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 DENND5AQ6IQ26 1287 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 ABRAXAS1Q6UWZ7 409 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 FAM83HQ6ZRV2 1179 aaPredicted RBP13.88□□□□□ -0.19
UPF3A-204ENST00000475218 GLT6D1Q7Z4J2 308 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 SLC9B2Q86UD5 537 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 NAT14Q8WUY8 206 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 NCSTNQ92542 709 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 WBP1Q96G27 269 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 TAAR9Q96RI9 348 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 DPYSL5Q9BPU6 564 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 APOL2Q9BQE5 337 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 DESI2Q9BSY9 194 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 LUC7LQ9NQ29 371 aaKnown RBP13.88□□□□□ -0.19
UPF3A-204ENST00000475218 HACD3Q9P035 362 aa13.88□□□□□ -0.19
UPF3A-204ENST00000475218 PACSIN2Q9UNF0 486 aaPredicted RBP13.88□□□□□ -0.19
UPF3A-204ENST00000475218 MN1Q10571 1320 aaPredicted RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 OR5K4A6NMS3 321 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 OR52A4PA6NMU1 304 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 EFCAB7A8K855 629 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 A8MU76 341 aa13.87□□□□□ -0.19
UPF3A-204ENST00000475218 DDX3YO15523 660 aaKnown RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 RPL10P27635 214 aaKnown RBP13.87□□□□□ -0.19
UPF3A-204ENST00000475218 DRG2P55039 364 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms