RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 COPS2P61201 443 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 OTUD4Q01804 1114 aaKnown RBP15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 MPP3Q13368 585 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 XRCC4Q13426 336 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 SLC1A5Q15758 541 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 SEPT7Q16181 437 aaKnown RBP15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 ATP13A5Q4VNC0 1218 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 TMEM164Q5U3C3 297 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 TMEM71Q6P5X7 295 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 PRICKLE2Q7Z3G6 844 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 FAM129CQ86XR2 697 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 AGBL5Q8NDL9 886 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 ACTL9Q8TC94 416 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 NCSTNQ92542 709 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 EXTL1Q92935 676 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 PMEPA1Q969W9 287 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 SH3KBP1Q96B97 665 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 FAM118BQ9BPY3 351 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 FICDQ9BVA6 458 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 TBC1D10AQ9BXI6 508 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 FSD1LQ9BXM9 530 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 OSBPL8Q9BZF1 889 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 GBA3Q9H227 469 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 TRABDQ9H4I3 376 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 CLMPQ9H6B4 373 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 CPNE7Q9UBL6 633 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 SLC23A2Q9UGH3 650 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 TRHDEQ9UKU6 1024 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 TMPRSS11EQ9UL52 423 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 PIKFYVEQ9Y2I7 2098 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 KIR2DS5A0A0G2JLQ3 304 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 A0A0G2JNG1 304 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 CYSRT1A8MQ03 144 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 A8MU76 341 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 PDZK1P1A8MUH7 402 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 KIR2DS3K7RE56 304 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 CHUKO15111 745 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 KMOO15229 486 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 PJA2O43164 708 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 VEGFDO43915 354 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 CDK14O94921 469 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 EPOP01588 193 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 ZNF7P17097 686 aaPredicted RBP15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 HLA-DPA1P20036 260 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 CTNNA2P26232 953 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 HMGCLP35914 325 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 SPAM1P38567 509 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 CLCNKAP51800 687 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 SQSTM1Q13501 440 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 GTF2H3Q13889 308 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 KIR2DS5Q14953 304 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 MANEAQ5SRI9 462 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 AADACL2Q6P093 401 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 FAM151BQ6UXP7 276 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 KIAA1328Q86T90 577 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 TRAPPC5Q8IUR0 188 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 TRIM48Q8IWZ4 208 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 ART4Q93070 314 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 CALR3Q96L12 384 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 VPS35Q96QK1 796 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 FERMT1Q9BQL6 677 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 LACRTQ9GZZ8 138 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 HACD3Q9P035 362 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 SCHIP1Q9P0W5 487 aaPredicted RBP15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 PCDHB11Q9Y5F2 797 aa15.49■□□□□ 0.07
CCDC88B-205ENST00000472524 CCDC66A2RUB6 948 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 GRID2IPA4D2P6 1211 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 OR5K4A6NMS3 321 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 EFCAB7A8K855 629 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 BTNL10A8MVZ5 291 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 GPR39O43194 453 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 AGTP01019 485 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 FAM87AP0C7U9 286 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 VAV2P52735 878 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 GEMP55040 296 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 RWDD2BP57060 319 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 EIF3EP60228 445 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 UBE2IP63279 158 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 CYP4F2P78329 520 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 KCNC4Q03721 635 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 CHRNA6Q15825 494 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 ITPRIPL1Q6GPH6 555 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 DARS2Q6PI48 645 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 GAS2L3Q86XJ1 694 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 ZNF547Q8IVP9 402 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 CDKL3Q8IVW4 592 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 CCDC112Q8NEF3 446 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 JPH3Q8WXH2 748 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 TTC25Q96NG3 672 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 TAAR9Q96RI9 348 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 GORASP1Q9BQQ3 440 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 TIMM29Q9BSF4 260 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 TRIM4Q9C037 500 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 IL26Q9NPH9 171 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 OCIAD1Q9NX40 245 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 IL17CQ9P0M4 197 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 TRIM10Q9UDY6 481 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 KLHL3Q9UH77 587 aa15.48■□□□□ 0.07
CCDC88B-205ENST00000472524 PKP3Q9Y446 797 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms