RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 FAM159BA6NKW6 160 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 FAM155AB1AL88 458 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 MTX2O75431 263 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 C8GP07360 202 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 F7P08709 466 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 IDO1P14902 403 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CACNA2D1P54289 1103 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CYP4F2P78329 520 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 SLC25A3Q00325 362 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF831Q5JPB2 1677 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 LRRC66Q68CR7 880 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 PPP4R4Q6NUP7 873 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CHSY3Q70JA7 882 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 AMZ2Q86W34 360 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 P3H2Q8IVL5 708 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF514Q96K75 400 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 PSKH2Q96QS6 385 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ZSCAN5AQ9BUG6 496 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 GATA5Q9BWX5 397 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CXCL16Q9H2A7 254 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 WDR26Q9H7D7 661 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 LRATO95237 230 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CLDN9O95484 217 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 EPOP01588 193 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 FCGR1AP12314 374 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ZNF30P17039 623 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 RPL3P39023 403 aaKnown RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 STK19P49842 368 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 GPX6P59796 221 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 EOGTQ5NDL2 527 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 SULT1C3Q6IMI6 304 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 PAQR3Q6TCH7 311 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 PHC3Q8NDX5 983 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 ZMIZ2Q8NF64 920 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 USP7Q93009 1102 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 SHDQ96IW2 340 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 TPD52L3Q96J77 140 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 SYT11Q9BT88 431 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 CACNA2D2Q9NY47 1150 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 RPS6KB2Q9UBS0 482 aa7.34□□□□□ -1.23
SYNE1-213ENST00000448038 MTF2Q9Y483 593 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 POLR3HQ9Y535 204 aaPredicted RBP7.34□□□□□ -1.23
SYNE1-213ENST00000448038 TCEA3O75764 348 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 LATS1O95835 1130 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 VIPR2P41587 438 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 RPL26P61254 145 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 IRX1P78414 480 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 MGAT3Q09327 533 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 GTF2H2Q13888 395 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 GTF2H2CQ6P1K8 395 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 NAPRTQ6XQN6 538 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 GPR180Q86V85 440 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 DNAJB14Q8TBM8 379 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 GDPD5Q8WTR4 605 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 DCAKDQ8WVC6 231 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ESAMQ96AP7 390 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 C19orf60Q96EN9 201 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ZFYVE19Q96K21 471 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 IMPAD1Q9NX62 359 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 RPL26L1Q9UNX3 145 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 COL11A2P13942 1736 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 MAFKO60675 156 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 MMP20O60882 483 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 UNC5CO95185 931 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 TGDSO95455 350 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 EPORP19235 508 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 KCNA5P22460 613 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 FASP25445 335 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 LCP2Q13094 533 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 QPCTQ16769 361 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 SNAP47Q5SQN1 464 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 CLEC6AQ6EIG7 209 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ZFP28Q8NHY6 868 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 RP9Q8TA86 221 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ACTRT2Q8TDY3 377 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 TWIST2Q8WVJ9 160 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 RAD51AP1Q96B01 352 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 PGAP3Q96FM1 320 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 SIGLEC10Q96LC7 697 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 C7orf26Q96N11 449 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 CLSTN3Q9BQT9 956 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 CCDC177Q9NQR7 707 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 EIF2B4Q9UI10 523 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 TEKT2Q9UIF3 430 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 SBF2Q86WG5 1849 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ERAL1O75616 437 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 AHSGP02765 367 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 IFNA16P05015 189 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 CRATP43155 626 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 HSPA13P48723 471 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 IRF9Q00978 393 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 WASHC2DQ5SRD0 308 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 UBR7Q8N806 425 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 CENPIQ92674 756 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 CEP19Q96LK0 163 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ARMC7Q9H6L4 198 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 INTS7Q9NVH2 962 aaKnown RBP7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ADPRHL2Q9NX46 363 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 AP3M1Q9Y2T2 418 aa7.33□□□□□ -1.24
SYNE1-213ENST00000448038 ANKRD31Q8N7Z5 1873 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms