RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 F9P00740 461 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 CISD3P0C7P0 127 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 RNF224P0DH78 156 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 PECAM1P16284 738 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 GOT1P17174 413 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 ENDOUP21128 410 aaKnown RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 ATP5C1P36542 298 aaKnown RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 MLLT10P55197 1068 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 DYNLT1P63172 113 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 YBX1P67809 324 aaKnown RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 PLP2Q04941 152 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 CKAP4Q07065 602 aaKnown RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 DPYSQ14117 519 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 KRT81Q14533 505 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 PDK2Q15119 407 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 CYP1B1Q16678 543 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 BBS9Q3SYG4 887 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 ANKRD20A8PQ5CZ79 823 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 TFDP3Q5H9I0 405 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 PPP6R3Q5H9R7 873 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 MS4A13Q5J8X5 152 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 FAM182AQ5T1J6 154 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 ZFYVE27Q5T4F4 411 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 NCBP2-AS2Q69YL0 99 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 SLC9A4Q6AI14 798 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 KLHDC10Q6PID8 442 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 SERPINA13PQ6UXR4 307 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 SPNS3Q6ZMD2 512 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 RFX8Q6ZV50 586 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 BBS12Q6ZW61 710 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 USP30Q70CQ3 517 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 DSG4Q86SJ6 1040 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 VSIG1Q86XK7 387 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 RFX6Q8HWS3 928 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 PSTKQ8IV42 348 aaKnown RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 CCDC50Q8IVM0 306 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 BBS7Q8IWZ6 715 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 MMP21Q8N119 569 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 MMGT1Q8N4V1 131 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 PLD5Q8N7P1 536 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 CEP112Q8N8E3 955 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 NETO2Q8NC67 525 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 KCTD6Q8NC69 237 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 IFI44Q8TCB0 444 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 MZB1Q8WU39 189 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 UBE2Q2Q8WVN8 375 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 C1orf54Q8WWF1 131 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 HTR3CQ8WXA8 447 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 ATG4AQ8WYN0 398 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 HAUS1Q96CS2 278 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 MAP6Q96JE9 813 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 RNF157Q96PX1 679 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 HAPLN3Q96S86 360 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 PRMT1Q99873 361 aaKnown RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 NCAPGQ9BPX3 1015 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 ZNF670Q9BS34 389 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 DCLK3Q9C098 648 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 KLC2Q9H0B6 622 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 WDCPQ9H6R7 721 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 C10orf88Q9H8K7 445 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 CASS4Q9NQ75 786 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 PRDM8Q9NQV8 689 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 OLA1Q9NTK5 396 aaKnown RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 SIRT5Q9NXA8 310 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 SAE1Q9UBE0 346 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 RNF14Q9UBS8 474 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 ENTPD4Q9Y227 616 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 HS3ST4Q9Y661 456 aa4.81□□□□□ -1.64
PTPN4-206ENST00000441089 V9GYY5 206 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-206ENST00000441089 TRPM6Q9BX84 2022 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 ZNF106Q9H2Y7 1883 aaKnown RBP4.8□□□□□ -1.64
PTPN4-206ENST00000441089 ZC3H12DA2A288 527 aaKnown RBP4.8□□□□□ -1.64
PTPN4-206ENST00000441089 HEATR9A2RTY3 570 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 CTAGE15A4D2H0 777 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 FAM47DPA6NHR8 397 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 ZNF487B1APH4 448 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 KRIT1O00522 736 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 FFAR3O14843 346 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 TIMM44O43615 452 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 CREB3O43889 395 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 MFSD11O43934 449 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 SDC3O75056 442 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 PHF2O75151 1096 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 CNTN5O94779 1100 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 PRAMEF1O95521 474 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 CTAGE8P0CG41 777 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 IRF1P10914 325 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 IMPDH2P12268 514 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 DESP17661 470 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 ERCC2P18074 760 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 TGM2P21980 687 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 DGKAP23743 735 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 RPL10P27635 214 aaKnown RBP4.8□□□□□ -1.64
PTPN4-206ENST00000441089 CD82P27701 267 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 CORO1AP31146 461 aaKnown RBP4.8□□□□□ -1.64
PTPN4-206ENST00000441089 CCR1P32246 355 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 NUDT1P36639 197 aa4.8□□□□□ -1.64
PTPN4-206ENST00000441089 PAFAH1B1P43034 410 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms