RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 RASGEF1CQ8N431 466 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 EMC1Q8N766 993 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 IL17RCQ8NAC3 791 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 CLEC18CQ8NCF0 446 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 KCNH5Q8NCM2 988 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 ACVR1CQ8NER5 493 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 SLC38A5Q8WUX1 472 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 SLC44A1Q8WWI5 657 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 PRPF31Q8WWY3 499 aaKnown RBP2.4□□□□□ -2.03
PTPRC-208ENST00000427110 PIGTQ969N2 578 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 RHBDF1Q96CC6 855 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 ABHD1Q96SE0 405 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 APOL6Q9BWW8 343 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 RTN4RQ9BZR6 473 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 KLHL4Q9C0H6 718 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 LRMDAQ9H2I8 198 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 C6orf106Q9H6K1 298 aaPredicted RBP2.4□□□□□ -2.03
PTPRC-208ENST00000427110 MAGIXQ9H6Y5 334 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 CHMP1AQ9HD42 196 aaPredicted RBP2.4□□□□□ -2.03
PTPRC-208ENST00000427110 CD93Q9NPY3 652 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.4□□□□□ -2.03
PTPRC-208ENST00000427110 ANKEF1Q9NU02 776 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 MCM9Q9NXL9 1143 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 CLIC5Q9NZA1 410 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 SELENONQ9NZV5 590 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 PADI1Q9ULC6 663 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 PADI3Q9ULW8 664 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 B3GALT5Q9Y2C3 310 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 PCDHGA5Q9Y5G8 931 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 FAM169AQ9Y6X4 670 aa2.4□□□□□ -2.03
PTPRC-208ENST00000427110 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.4□□□□□ -2.03
PTPRC-208ENST00000427110 DCAF1Q9Y4B6 1507 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 A0A087WYN8 130 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 SAA2-SAA4A0A096LPE2 208 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 A0A1W2PR77 199 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 GLOD5A6NK44 160 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 HNRNPCL2B2RXH8 293 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 FAM90A26D6RGX4 464 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 TMEM189-UBE2V1I3L0A0 370 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 J3QR06 171 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ACOT8O14734 319 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 TCERG1O14776 1098 aaKnown RBP2.39□□□□□ -2.03
PTPRC-208ENST00000427110 IPO8O15397 1037 aaKnown RBP2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ZWINTO95229 277 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PGM3O95394 542 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 LINC00271P0C7V0 271 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 SELLP14151 372 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 DAOP14920 347 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 MYOD1P15172 320 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 S1PR1P21453 382 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 NR2F2P24468 414 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 NMBRP28336 390 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 USP8P40818 1118 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 LIG4P49917 911 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 SUOXP51687 545 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ARSEP51690 589 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ART1P52961 327 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PNLIPRP2P54317 469 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 CD81P60033 236 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PLIN5Q00G26 463 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 DLG1Q12959 904 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 UBE2V1Q13404 147 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 C15orf59Q2T9L4 293 aaPredicted RBP2.39□□□□□ -2.03
PTPRC-208ENST00000427110 FAM98BQ52LJ0 330 aaKnown RBP2.39□□□□□ -2.03
PTPRC-208ENST00000427110 TMEM35AQ53FP2 167 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 KRTCAP3Q53RY4 240 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 IRAK1BP1Q5VVH5 260 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 C9orf57Q5W0N0 161 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 SLC30A6Q6NXT4 461 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 BRAT1Q6PJG6 821 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 Q6ZTC4 211 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 C16orf82Q7Z2V1 217 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 HAUS6Q7Z4H7 955 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 GALNT5Q7Z7M9 940 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 DNAAF5Q86Y56 855 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 MAP7D3Q8IWC1 876 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PM20D2Q8IYS1 436 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 AVL9Q8NBF6 648 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF114Q8NC26 417 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 LILRB1Q8NHL6 650 aaPredicted RBP2.39□□□□□ -2.03
PTPRC-208ENST00000427110 THAP6Q8TBB0 222 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 SLC20A1Q8WUM9 679 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 SLC22A18Q96BI1 424 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ERP27Q96DN0 273 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 CDCA5Q96FF9 252 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF385AQ96PM9 386 aaKnown RBP2.39□□□□□ -2.03
PTPRC-208ENST00000427110 CDRT15Q96T59 188 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PCYT2Q99447 389 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 HGH1Q9BTY7 390 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PCDH9Q9HC56 1237 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 SLC35C2Q9NQQ7 365 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PSD3Q9NYI0 1048 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 TAB2Q9NYJ8 693 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 NKIRAS2Q9NYR9 191 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 POLG2Q9UHN1 485 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PLAGL1Q9UM63 463 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF148Q9UQR1 794 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 PCDHAC2Q9Y5I4 1007 aa2.39□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF644Q9H582 1327 aaPredicted RBP2.39□□□□□ -2.03
PTPRC-208ENST00000427110 LOC100509620A0A075B734 347 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms