RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PPA2Q9H2U2 334 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 LGALS13Q9UHV8 139 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 MYBPHLA2RUH7 354 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 SLC38A8A6NNN8 435 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 APOC4-APOC2K7ER74 178 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 APOC2P02655 101 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 INHBAP08476 426 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 BMPR1AP36894 532 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 CASP3P42574 277 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 GALEQ14376 348 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 UGP2Q16851 508 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 KLHL12Q53G59 568 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 C6orf132Q5T0Z8 1188 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 PYHIN1Q6K0P9 492 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 DLG3Q92796 817 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 TESCQ96BS2 214 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 HES6Q96HZ4 224 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 CPXM1Q96SM3 734 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 BRD9Q9H8M2 597 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 CHMP1AQ9HD42 196 aaPredicted RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 TAS2R14Q9NYV8 317 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 MTRRQ9UBK8 725 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 COL11A1P12107 1806 aaPredicted RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 LOC100653049A0A140TA62 436 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 COPEO14579 308 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 MDM4O15151 490 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 TBC1D4O60343 1298 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 KRT34O76011 436 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 TOP3BO95985 862 aaKnown RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 HAPLN1P10915 354 aaPredicted RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 SYN1P17600 705 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 CHRNB2P17787 502 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 BGNP21810 368 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 NFATC3Q12968 1075 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 DLG2Q15700 870 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 SMTNL2Q2TAL5 461 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 LRRTM3Q86VH5 581 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 CPSF7Q8N684 471 aaKnown RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 C1orf54Q8WWF1 131 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 TFAP2BQ92481 460 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 CINPQ9BW66 212 aaPredicted RBP9.74□□□□□ -0.85
USP54-205ENST00000424265 TKTL2Q9H0I9 626 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 SEMA6AQ9H2E6 1030 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 DPEP3Q9H4B8 488 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 CD274Q9NZQ7 290 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 MID2Q9UJV3 735 aa9.74□□□□□ -0.85
USP54-205ENST00000424265 C2orf71A6NGG8 1288 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 SAGE2PA6NJ88 616 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 CLDN5O00501 218 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 GMDSO60547 372 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 RAMP2O60895 175 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 SCO1O75880 301 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ECDO95905 644 aaPredicted RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 TP53P04637 393 aaPredicted RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 MAPK8P45983 427 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ERVK-8P63133 956 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 PDIA2Q13087 525 aaKnown RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 STX5Q13190 355 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 MPP2Q14168 576 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ZMYND11Q15326 602 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ASTE1Q2TB18 679 aaPredicted RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 ARHGAP36Q6ZRI8 547 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 CLEC20AQ6ZU45 233 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 KCTD8Q6ZWB6 473 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ATAD1Q8NBU5 361 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 SMG7Q92540 1137 aaKnown RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 WACQ9BTA9 647 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 MAPRE3Q9UPY8 281 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 GJB5O95377 273 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 GABRB2P47870 512 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ALDH3B2P48448 385 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 LGALS3BPQ08380 585 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 TAF10Q12962 218 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 DDR2Q16832 855 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 LRIT3Q3SXY7 679 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 CLLU1OSQ5K130 101 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ZDHHC24Q6UX98 284 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 FRMD7Q6ZUT3 714 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 CASD1Q96PB1 797 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 NAT9Q9BTE0 207 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ELOVL6Q9H5J4 265 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 TMLHEQ9NVH6 421 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 NSMCE4AQ9NXX6 385 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 KLQ9UEF7 1012 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 CNOT11Q9UKZ1 510 aaKnown RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 PSME2Q9UL46 239 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 SCML2Q9UQR0 700 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 BTBD3Q9Y2F9 522 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 PCDHA11Q9Y5I1 949 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 PROS1P07225 676 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 C8AP07357 584 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 MAGP20916 626 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 KDELR1P24390 212 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 LMO2P25791 158 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ERVK-21P61565 698 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 ALDH6A1Q02252 535 aaKnown RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 SELPLGQ14242 412 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 GALNT3Q14435 633 aa9.73□□□□□ -0.85
USP54-205ENST00000424265 TRIP4Q15650 581 aaPredicted RBP9.73□□□□□ -0.85
USP54-205ENST00000424265 IZUMO3Q5VZ72 239 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms