RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 IL31Q6EBC2 164 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 ZNF549Q6P9A3 640 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 TMEM154Q6P9G4 183 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 TXNDC11Q6PKC3 985 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 TMEM207Q6UWW9 146 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 FANCMQ8IYD8 2048 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 MYEOVQ96EZ4 313 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 CDKN2AIPNLQ96HQ2 116 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 PPP1R36Q96LQ0 422 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 BTBD9Q96Q07 612 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 CDRT15Q96T59 188 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 SLC25A23Q9BV35 468 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 DERL2Q9GZP9 239 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 NACA2Q9H009 215 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 ACSS2Q9NR19 701 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 PRMT8Q9NR22 394 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 OBP2AQ9NY56 170 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 G3BP2Q9UN86 482 aaKnown RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 ARL5AQ9Y689 179 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 GPR179Q6PRD1 2367 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 NUP210Q8TEM1 1887 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 A0A1B0GVM2 712 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 TTC24A2A3L6 582 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 ZNF840PA6NDX5 716 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 OR51F1A6NGY5 319 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 C2orf81A6NN90 581 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 PSMD12O00232 456 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 SKAP2O75563 359 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 BCAS2O75934 225 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 CHRNB1P11230 501 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 WEE1P30291 646 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 PPP3CCP48454 512 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 ACADVLP49748 655 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 CLCN2P51788 898 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 THOP1P52888 689 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 ZNF177Q13360 481 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 FLOT2Q14254 428 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 GALNT3Q14435 633 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 OGFRL1Q5TC84 451 aaPredicted RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 TXNDC8Q6A555 127 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 EFL1Q7Z2Z2 1120 aaKnown RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 CLYBLQ8N0X4 340 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 PQLC1Q8N2U9 271 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 OR7D4Q8NG98 312 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 RIN3Q8TB24 985 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 PIP4K2CQ8TBX8 421 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 BPIFB1Q8TDL5 484 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 KIAA1191Q96A73 305 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 UNKQ9C0B0 810 aaKnown RBP14.69□□□□□ -0.06
USP4-203ENST00000415188 CCDC68Q9H2F9 335 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 SCUBE2Q9NQ36 999 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 TRPM5Q9NZQ8 1165 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 CCL26Q9Y258 94 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 COMMD10Q9Y6G5 202 aa14.69□□□□□ -0.06
USP4-203ENST00000415188 SPTBN4Q9H254 2564 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 BBIP1A8MTZ0 92 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 KERAO60938 352 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 VPS4BO75351 444 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 SUPT7LO94864 414 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 SLC4A1P02730 911 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 PYGLP06737 847 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 PIM1P11309 404 aaPredicted RBP14.68□□□□□ -0.06
USP4-203ENST00000415188 ENO3P13929 434 aaPredicted RBP14.68□□□□□ -0.06
USP4-203ENST00000415188 CTHP32929 405 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 STX1BP61266 288 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 FASTKQ14296 549 aaKnown RBP14.68□□□□□ -0.06
USP4-203ENST00000415188 GAS6Q14393 721 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 LDB1Q86U70 411 aaPredicted RBP14.68□□□□□ -0.06
USP4-203ENST00000415188 CMTM8Q8IZV2 173 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 SUMF1Q8NBK3 374 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 PTERQ96BW5 349 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 PHF21BQ96EK2 531 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 TRMT2BQ96GJ1 504 aaKnown RBP14.68□□□□□ -0.06
USP4-203ENST00000415188 MYRFLQ96LU7 910 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 CYP2S1Q96SQ9 504 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 TDRD1Q9BXT4 1180 aaKnown RBP14.68□□□□□ -0.06
USP4-203ENST00000415188 C8orf33Q9H7E9 229 aaPredicted RBP14.68□□□□□ -0.06
USP4-203ENST00000415188 ZSCAN32Q9NX65 697 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 TAS2R13Q9NYV9 303 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 SUCOQ9UBS9 1254 aaKnown RBP14.68□□□□□ -0.06
USP4-203ENST00000415188 ADAMTS6Q9UKP5 1117 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 TBC1D30Q9Y2I9 924 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 CRYL1Q9Y2S2 319 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 PCDHGA2Q9Y5H1 932 aa14.68□□□□□ -0.06
USP4-203ENST00000415188 OTOGLQ3ZCN5 2332 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 A0A0D9SEW6 157 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 SYCE1LA8MT33 242 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 CCL22O00626 93 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 RHOBTB1O94844 696 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 SORBS2O94875 1100 aaKnown RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 SNRPB2P08579 225 aaKnown RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 TDGF1P13385 188 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 UQCRBP14927 111 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 LPOP22079 712 aaPredicted RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 PSME3P61289 254 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 TIAL1Q01085 375 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP4-203ENST00000415188 RAD51Q06609 339 aa14.67□□□□□ -0.06
USP4-203ENST00000415188 TRAP1Q12931 704 aaKnown RBP14.67□□□□□ -0.06
USP4-203ENST00000415188 SEMA3AQ14563 771 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms