RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ARG2P78540 354 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 FOXK1P85037 733 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 POU5F1Q01860 360 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 KCNMA1Q12791 1236 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CBFBQ13951 182 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SMCO1Q147U7 214 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ACAP1Q15027 740 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 SLC9A4Q6AI14 798 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 ZNF544Q6NX49 715 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 BRAT1Q6PJG6 821 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 AFTPHQ6ULP2 937 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 AMZ2Q86W34 360 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 FBXO15Q8NCQ5 510 aaPredicted RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 PRRG3Q9BZD7 231 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 RC3H2Q9HBD1 1191 aaKnown RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 AGPAT4Q9NRZ5 378 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 MCUBQ9NWR8 336 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 GALNT8Q9NY28 637 aa7.25□□□□□ -1.25
SCN9A-202ENST00000409435 CORO1CQ9ULV4 474 aaPredicted RBP7.25□□□□□ -1.25
SCN9A-202ENST00000409435 A0A1W2PQU0 124 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 C4orf47A7E2U8 309 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 HACD1B0YJ81 288 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 UBXN7O94888 489 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ABOP16442 354 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CD38P28907 300 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PGDP52209 483 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ZNF252P-AS1Q0IIN9 211 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SLC10A6Q3KNW5 377 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 RTP2Q5QGT7 225 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SULT1C3Q6IMI6 304 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CCSAPQ6IQ19 270 aaPredicted RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 MSANTD2Q6P1R3 559 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DENND1BQ6P3S1 775 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 FAM151BQ6UXP7 276 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SLC47A2Q86VL8 602 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 C17orf64Q86WR6 236 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 KBTBD2Q8IY47 623 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CFAP206Q8IYR0 622 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 FAM174AQ8TBP5 190 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DQX1Q8TE96 717 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TRPC4APQ8TEL6 797 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ASB12Q8WXK4 309 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 HAS1Q92839 578 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 RIOK2Q9BVS4 552 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ACAT2Q9BWD1 397 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 FOXQ1Q9C009 403 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CRISPLD2Q9H0B8 497 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TAS2R13Q9NYV9 303 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SH3BGRL2Q9UJC5 107 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TISP43B9A030 160 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ECI2O75521 394 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SNX4O95219 450 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CLUP10909 449 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TCN1P20061 433 aaPredicted RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 HTR7P34969 479 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 GPD2P43304 727 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 GLRBP48167 497 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CCNG1P51959 295 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 RAD23AP54725 363 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 GALCP54803 685 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ZNF33AQ06730 810 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SWI5Q1ZZU3 235 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TRMT5Q32P41 509 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CLLU1OSQ5K130 101 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 FNBP1LQ5T0N5 605 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DENND5AQ6IQ26 1287 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PACS1Q6VY07 963 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DPP10Q8N608 796 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ELMO3Q96BJ8 720 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 MARCH7Q9H992 704 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 EIF3LQ9Y262 564 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TAF6LQ9Y6J9 622 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CDH16O75309 829 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PSIP1O75475 530 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TRAPPC6AO75865 159 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PRIM2P49643 509 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 KCNJ2P63252 427 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SLC34A1Q06495 639 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 UPP1Q16831 310 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 TCHHL1Q5QJ38 904 aaPredicted RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DCAF12Q5T6F0 453 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CWF19L1Q69YN2 538 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 BICRALQ6AI39 1079 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 Q6ZVU0 165 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PAGE2Q7Z2X7 111 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 SPEM1Q8N4L4 309 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 DEFB124Q8NES8 71 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 OR2T34Q8NGX1 318 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ELSPBP1Q96BH3 223 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 ZNF514Q96K75 400 aaPredicted RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PRICKLE1Q96MT3 831 aaPredicted RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CFHR5Q9BXR6 569 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 WDR12Q9GZL7 423 aaKnown RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 IFT80Q9P2H3 777 aaPredicted RBP7.24□□□□□ -1.25
SCN9A-202ENST00000409435 PRKAB1Q9Y478 270 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 RAI2Q9Y5P3 530 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 RGS10O43665 173 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 GPR32O75388 356 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 HSMCR30P0CW71 290 aa7.24□□□□□ -1.25
SCN9A-202ENST00000409435 CCNB1P14635 433 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms