RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MFSD14AQ96MC6 490 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 FAM105AQ9NUU6 356 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ERVW-1Q9UQF0 538 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 UBIAD1Q9Y5Z9 338 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 YDJCA8MPS7 323 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 CALCAP01258 141 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ARF4P18085 180 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 GLUD2P49448 558 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 RASGEF1BQ0VAM2 473 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 CFAP52Q8N1V2 620 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 SPPL2BQ8TCT7 592 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 DNAJA4Q8WW22 397 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 MRPL45Q9BRJ2 306 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PNPOQ9NVS9 261 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PACSIN3Q9UKS6 424 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PCDHGB5Q9Y5G0 923 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 TFECO14948 347 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 IFNW1P05000 195 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 BPGMP07738 259 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 ERVK-21P61565 698 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CBX3Q13185 183 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 EIPR1Q53HC9 387 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SDHAF4Q5VUM1 108 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 VSTM1Q6UX27 236 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 GK5Q6ZS86 529 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 ANKFN1Q8N957 763 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 TNFAIP8L1Q8WVP5 186 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 XAGE5Q8WWM1 108 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 MECRQ9BV79 373 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 PNPLA8Q9NP80 782 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 MEMO1Q9Y316 297 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 FAM172BPA6NC97 362 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SPATA31C2B4DYI2 1134 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC5A9Q2M3M2 681 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 TIGD2Q4W5G0 525 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 DACT2Q5SW24 774 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 DUPD1Q68J44 220 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 PQLC1Q8N2U9 271 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 OR4C6Q8NH72 309 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CLHC1Q8NHS4 586 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 TWIST2Q8WVJ9 160 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC38A4Q969I6 547 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 P2RY11Q96G91 374 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 PTPRJQ12913 1337 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC35G6P0C7Q6 338 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 AKR1D1P51857 326 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 MAPK12P53778 367 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CASP9P55211 416 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 RHBDF2Q6PJF5 856 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CERS6Q6ZMG9 384 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CHST9Q7L1S5 443 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 THAP5Q7Z6K1 395 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 FAM129CQ86XR2 697 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 C12orf29Q8N999 325 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CCDC28BQ9BUN5 200 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 GBA3Q9H227 469 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 U3KQV3 271 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CORO1AP31146 461 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CEBPGP53567 150 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 E2F2Q14209 437 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 DLG2Q15700 870 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC26A9Q7LBE3 791 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 NUP54Q7Z3B4 507 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 NRSN1Q8IZ57 195 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 OR2AJ1Q8NGZ0 328 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 DIRAS2Q96HU8 199 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 JSRP1Q96MG2 331 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 DEC1Q9P2X7 70 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CORO1CQ9ULV4 474 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 PHF24Q9UPV7 400 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 NCOA3Q9Y6Q9 1424 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 RHPN2P1A8MT19 583 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 ADAMDEC1O15204 470 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 ALOX15BO15296 676 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 LYPLA1O75608 230 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 PGRP06401 933 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 DRD4P21917 467 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 RTP1P59025 263 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 GTF2H2Q13888 395 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 APOBEC3HQ6NTF7 200 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 GTF2H2CQ6P1K8 395 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 PNPT1Q8TCS8 783 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 COPS5Q92905 334 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 RAI2Q9Y5P3 530 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 BAZ2BQ9UIF8 2168 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SMIM35A0A1B0GVV1 85 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 METTL21EPA6NDL7 271 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 ENTPD5O75356 428 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 RNASEH2AO75792 299 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 PKMP14618 531 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 KCNJ2P63252 427 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 USP4Q13107 963 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 CCSAPQ6IQ19 270 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.69□□□□□ -0.382e-7■■■■■ 278.5
CCDC88C-204ENST00000389857 SVOPLQ8N434 492 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 TLE6Q9H808 572 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 KCND1Q9NSA2 647 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 KLF15Q9UIH9 416 aa12.69□□□□□ -0.38
CCDC88C-204ENST00000389857 SEMA3DO95025 777 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms