RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ATP5F1P24539 256 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 PRDX6P30041 224 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 PFKPQ01813 784 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 STARD3Q14849 445 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 AAK1Q2M2I8 961 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 CMPK2Q5EBM0 449 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 PRPF38BQ5VTL8 546 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 ERN2Q76MJ5 926 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 TRAM1L1Q8N609 369 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 RHEBL1Q8TAI7 183 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 DCUN1D1Q96GG9 259 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 GPR78Q96P69 363 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 PANX3Q96QZ0 392 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 FAM129BQ96TA1 746 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 SORT1Q99523 831 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 DERL2Q9GZP9 239 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 TFB2MQ9H5Q4 396 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 UBE2ZQ9H832 354 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 PRSS16Q9NQE7 514 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 CPSF2Q9P2I0 782 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 TMCO1Q9UM00 188 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 COLQQ9Y215 455 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 L3MBTL1Q9Y468 752 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 A0A0U1RQS6 177 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 B2RBV5 119 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 QSOX1O00391 747 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 NEMP1O14524 444 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 ITM2AO43736 263 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 SMIM24O75264 130 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 KITP10721 976 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 ADRB3P13945 408 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 GLULP15104 373 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 DRD1P21728 446 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 KCNA5P22460 613 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 CTHP32929 405 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 SERPINB5P36952 375 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 RANBP2P49792 3224 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 RGS4P49798 205 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 IL2P60568 153 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 TTLL9Q3SXZ7 439 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 TECRLQ5HYJ1 363 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 C6orf163Q5TEZ5 329 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 RINLQ6ZS11 566 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 GPR21Q99679 349 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 CACNA2D2Q9NY47 1150 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 MARCOQ9UEW3 520 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 FAM50BQ9Y247 325 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 GRXCR2A6NFK2 248 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 SYCE1LA8MT33 242 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 SLCO1B7G3V0H7 640 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 TK2O00142 265 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 WNT9AO14904 365 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 MBTPS2O43462 519 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 OR1I1O60431 355 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 TPBGLP0DKB5 382 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 GNAZP19086 355 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 TFEBP19484 476 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 PGM1P36871 562 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 PSMD8P48556 350 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 DNAJB13P59910 316 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 GRSF1Q12849 480 aaKnown RBP eCLIP18■□□□□ 0.47
CCDC88C-203ENST00000389856 DLG1Q12959 904 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 RALGDSQ12967 914 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 TUBB3Q13509 450 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 ACOX1Q15067 660 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 SKIV2LQ15477 1246 aaKnown RBP18■□□□□ 0.47
CCDC88C-203ENST00000389856 LRRC73Q5JTD7 316 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 CTSL3PQ5NE16 218 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 TLDC1Q6P9B6 456 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 MACC1Q6ZN28 852 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 ZNF765Q7L2R6 523 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 CYP2U1Q7Z449 544 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 PIM3Q86V86 326 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 MMAAQ8IVH4 418 aaKnown RBP18■□□□□ 0.47
CCDC88C-203ENST00000389856 KIRREL3Q8IZU9 778 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 GIMAP7Q8NHV1 300 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 STAG3L4Q8TBR4 150 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 PHF7Q9BWX1 381 aaPredicted RBP18■□□□□ 0.47
CCDC88C-203ENST00000389856 ZNF395Q9H8N7 513 aaPredicted RBP18■□□□□ 0.47
CCDC88C-203ENST00000389856 KLHL42Q9P2K6 505 aa18■□□□□ 0.47
CCDC88C-203ENST00000389856 TCF20Q9UGU0 1960 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 C2CD4DB7Z1M9 353 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 HSPA4LO95757 839 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 ENO1P06733 434 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 OR56A5P0C7T3 313 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 CD1DP15813 335 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 IDH3AP50213 366 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 NAA20P61599 178 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 SEMG2Q02383 582 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 SFSWAPQ12872 951 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 CAMK2GQ13555 558 aaPredicted RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 POM121L1PQ3SYA9 428 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 TMEM52BQ4KMG9 183 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 NAIF1Q69YI7 327 aaPredicted RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 LIPIQ6XZB0 460 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 HSD11B1LQ7Z5J1 315 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 NET1Q7Z628 596 aaPredicted RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 RAB44Q7Z6P3 723 aaPredicted RBP17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 TREML1Q86YW5 311 aa17.99■□□□□ 0.47
CCDC88C-203ENST00000389856 ARRDC3Q96B67 414 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms