RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 MARK1Q9P0L2 795 aa15.42■□□□□ 0.06
CCDC40-202ENST00000374876 PACSIN3Q9UKS6 424 aa15.42■□□□□ 0.06
CCDC40-202ENST00000374876 GPR37L1O60883 481 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 TBL1XO60907 577 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 TULP3O75386 442 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 SUPT7LO94864 414 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 CRTAMO95727 393 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 CYBBP04839 570 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 OGNP20774 298 aaKnown RBP15.41■□□□□ 0.06
CCDC40-202ENST00000374876 FZD5Q13467 585 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 MPPE1Q53F39 396 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 ZNF549Q6P9A3 640 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 ETFBKMTQ8IXQ9 262 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 L3HYPDHQ96EM0 354 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 PRICKLE1Q96MT3 831 aaPredicted RBP15.41■□□□□ 0.06
CCDC40-202ENST00000374876 PSKH2Q96QS6 385 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 GSTO2Q9H4Y5 243 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 TNFRSF12AQ9NP84 129 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 BCAP29Q9UHQ4 241 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 SCOCQ9UIL1 159 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 VPS28Q9UK41 221 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 ADAMTS6Q9UKP5 1117 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 RIMKLBQ9ULI2 386 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 SIT1Q9Y3P8 196 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 TRAF6Q9Y4K3 522 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 ACTL7AQ9Y615 435 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 ATG2BQ96BY7 2078 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 UBDO15205 165 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 CD1DP15813 335 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 KCNC1P48547 511 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 SCNN1BP51168 640 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 THOP1P52888 689 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 SEMA3AQ14563 771 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 GSTA3Q16772 222 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 LRRC36Q1X8D7 754 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 PIGGQ5H8A4 983 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 TMEM196Q5HYL7 178 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 ZNF678Q5SXM1 525 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 RNF111Q6ZNA4 994 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 ZNF687Q8N1G0 1237 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 PJA1Q8NG27 643 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 EXT2Q93063 718 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 PTERQ96BW5 349 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 RMDN1Q96DB5 314 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 SPDL1Q96EA4 605 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 TRIB3Q96RU7 358 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 DDX50Q9BQ39 737 aaKnown RBP15.41■□□□□ 0.06
CCDC40-202ENST00000374876 MRPL1Q9BYD6 325 aaKnown RBP15.41■□□□□ 0.06
CCDC40-202ENST00000374876 KLHL4Q9C0H6 718 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 LMAN1LQ9HAT1 526 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 POPDC3Q9HBV1 291 aa15.41■□□□□ 0.06
CCDC40-202ENST00000374876 TCAF2A6NFQ2 919 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 KDELR3O43731 214 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 GPC4O75487 556 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 CLDN11O75508 207 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 EGFP01133 1207 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 STC1P52823 247 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 PKNOX1P55347 436 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 HERVK_113P63132 956 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 NFKB2Q00653 900 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 PDAP1Q13442 181 aaKnown RBP15.4■□□□□ 0.06
CCDC40-202ENST00000374876 FLOT2Q14254 428 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 SQLEQ14534 574 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 RFTN1Q14699 578 aaPredicted RBP15.4■□□□□ 0.06
CCDC40-202ENST00000374876 MAPRE2Q15555 327 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 ZNF423Q2M1K9 1284 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 TMEM31Q5JXX7 168 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 CHSY3Q70JA7 882 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 RAB44Q7Z6P3 723 aaPredicted RBP15.4■□□□□ 0.06
CCDC40-202ENST00000374876 EZH1Q92800 747 aaPredicted RBP15.4■□□□□ 0.06
CCDC40-202ENST00000374876 MSANTD3Q96H12 275 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 CDKN2AIPNLQ96HQ2 116 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 NPAS2Q99743 824 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 ERVK-6Q9BXR3 956 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 DEC1Q9P2X7 70 aa15.4■□□□□ 0.06
CCDC40-202ENST00000374876 MRPS17Q9Y2R5 130 aaKnown RBP15.4■□□□□ 0.06
CCDC40-202ENST00000374876 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 DPPA5A6NC42 116 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 MAGEA13PA6NCF6 341 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 UBFD1O14562 309 aaKnown RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 INSIG1O15503 277 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 RHOCP08134 193 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 CISD3P0C7P0 127 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 CHRNB1P11230 501 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 ZNF37AP17032 561 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 TSPAN8P19075 237 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 INHBCP55103 352 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 GRSF1Q12849 480 aaKnown RBP eCLIP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 ZNF177Q13360 481 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 TRIP10Q15642 601 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 LPCAT4Q643R3 524 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 ASTLQ6HA08 431 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 GK5Q6ZS86 529 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 GLT6D1Q7Z4J2 308 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 BMP8AQ7Z5Y6 402 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 FBXL6Q8N531 539 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 EXOC2Q96KP1 924 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 NR1H4Q96RI1 486 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 NELL2Q99435 816 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 SCUBE2Q9NQ36 999 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms